Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00961 ATGGCGCCGGTTCTGTCTCGGTTACTGTTCCGGCGGATTGTTCAGGCACCATTTCTTCGCACCGCCACCGGCTTTAGCTTTTGCAGAAATGTTCATTCTATCCCTTTCTCTTCGGTGGAAGTGGAGCAAATATCAGGTTCTAAGCCAGGAGAAGTTCATAACTTAGGAATGTTGACACAACATGTGCTTATTTTAGTGCAGGGTAAATGGATTGGATCTTCCGGTTGGAATACTATTGTAGATCCTTTAAATGGAGAACCATTTATTAAAATTGCTGAAGTTAATGAAACAGAAATTCAGCCATTTGTGAAGAGCCTAACCAAATGCCCCAAGCATGGCTTGCATAATCCTTTCAAATCACCTGAGAGATATCTTTTGTATGGAGATGTATCGTCCAAGGCTGCCGACATGCTTTCGACACCAAAGGTGACTGACTTCTTTGCAAGGTTAATTCAAAGAGTTTCTCCAAAAAGTTATCAGCAAGCTTGGGCTGAAGTCAATGTTACTGTTAAATTTTTAAGGAACTTCTCTGGTGATCAGGTAAGGTGCTTCAACAACTCTTTTAAGGTCAGCCCCCAAGGGGATGACCATGTTTGCTTAGGCCTATTCAGAGGTCAGGTTCGCTTCCTAGCAAGGTCCTTTGCAGTACCTGGAGATCATCTTGGACAACAAAGTCATGGTTACCGTTGGCCTTATGGTCCTGTAGCAATTATCACTCCTTTCAACTTCCCCTTGGAAATTCCTTTACTTCAGGTGATGGGTGCACTTTACATGGGCAACAAACCTGTTCTAAAAGTTGATAGCAAGGTTAGCATAGTTATGGAGCAAATGATTCGATTACTACACCATTGTGGTCTTCCTCTTGAAGATTTAGATTTTATAAATTGCGATGGGAAGACGATGAACAAGTTATTGATCGAGGGAAATCCATCCATGACTCTTTTCACTGGTAGCTCAAGAGTGGCAGAGAAGTTGGCTGTCGACTTAAAGGGTCGTATTAAACTGGAAGATGCAGGTTTTGATTGGAAAGTCTTGGGACCAGATGTTCGAGAGGAAGACTATGTTGCATGGGTTTGTGATCAAGATGCATATGCTTGCAGCGGCCAGAAGTGCTCGGCAGAGTCCATACTGTTCATGCATGAGAACTGGTCGAAAACTTCACTCATTTCGAAGATAAAGGATCTTGCAGAGAGAAGAAACTTGACTGATTTAACGATTGGCCCTGTTCTTACGTTAACAAATGAAATGATGCTAGATCACATGAACAAATTGCTCAAGATACCAGGAGCAAAGCTACTCTTTGGAGGTGAACCTCTCAAAAACCATTCCATTCCAGCCATTTATGGCGCTATGAAACCCACTGCAGTGTATCTTCCACTCGAAGAAATGATGAAAGCTGAGAATTATGAGCTTGTTACTAAGGAAATTTTTGGACCATTCCAGATTATTACTGAATATAAGAGCGATCAACTGTCAGTTGTGTTGGATGCTCTTGAGCGGATGCATGCTCATCTAACAGCAGCGGTTGTTTCAAATGACCCTCTTTTTCTACAGGAAGTTATTGGGAATACTGTAAACGGGACGACGTATGCGGGTTTACGAGCTAGAACAACAGGAGCTCCACAGAACCATTGGTTTGGACCAGCAGGTGACCCTAGAGGTGCTGGTATTGGAACTCCAGAAGCCATCAAACTCGTATGGTCTTGCCATAGAGAGATCATATATGATATTGGCCCCTTGCCCTTGAATTGGACAACTCCACCATCTTCTTGA 1773 42.92 MAPVLSRLLFRRIVQAPFLRTATGFSFCRNVHSIPFSSVEVEQISGSKPGEVHNLGMLTQHVLILVQGKWIGSSGWNTIVDPLNGEPFIKIAEVNETEIQPFVKSLTKCPKHGLHNPFKSPERYLLYGDVSSKAADMLSTPKVTDFFARLIQRVSPKSYQQAWAEVNVTVKFLRNFSGDQVRCFNNSFKVSPQGDDHVCLGLFRGQVRFLARSFAVPGDHLGQQSHGYRWPYGPVAIITPFNFPLEIPLLQVMGALYMGNKPVLKVDSKVSIVMEQMIRLLHHCGLPLEDLDFINCDGKTMNKLLIEGNPSMTLFTGSSRVAEKLAVDLKGRIKLEDAGFDWKVLGPDVREEDYVAWVCDQDAYACSGQKCSAESILFMHENWSKTSLISKIKDLAERRNLTDLTIGPVLTLTNEMMLDHMNKLLKIPGAKLLFGGEPLKNHSIPAIYGAMKPTAVYLPLEEMMKAENYELVTKEIFGPFQIITEYKSDQLSVVLDALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPLPLNWTTPPSS 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8317712 8321854 - CmoCh13G009610.1 Cmo13g00961 395016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00961 590 PANTHER DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 12A1, MITOCHONDRIAL 205 589 - -
Cmo13g00961 590 PANTHER DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 12A1, MITOCHONDRIAL 27 191 - -
Cmo13g00961 590 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 205 589 IPR044638 GO:0004029
Cmo13g00961 590 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 27 191 IPR044638 GO:0004029
Cmo13g00961 590 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 344 532 IPR016163 GO:0016620
Cmo13g00961 590 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 59 341 IPR016162 GO:0016491
Cmo13g00961 590 Pfam Aldehyde dehydrogenase family 79 532 IPR015590 GO:0016491
Cmo13g00961 590 SUPERFAMILY ALDH-like 64 558 IPR016161 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00961 K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88] - csv:101214440 1011.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00961 Cmo-Chr13:8317712 Cmo10g00162 Cmo-Chr10:733141 3.80E-11 dispersed
Cmo13g00961 Cmo-Chr13:8317712 Cmo12g00001 Cmo-Chr12:477 1.52E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g517 . Blo16g00194 . . . Bpe13g00279 . . Cmo13g00961 . . . . . . Cpe20g00200 . . . . . . . . . . . . . . . . Cone16ag0152 . . . Csa01g00788 Chy12g01328 Cme12g01755 . . Bda11g01689 . . . . . Sed08g2576 . . Cma13g00931 . Car13g00771 . . . Bhi08g01409 Tan05g2088 Cmetu12g1329 Lac10g0368 . . . Cla01g01428 Cam01g1495 Cec01g1535 Cco01g1581 Clacu01g1519 Cmu01g1411 Cre01g1329 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00644 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.6 1.5e-213 739.6
Cmo11g00602 . 6 501 Aldehyde Dehydrogenase Gene Family AT3G24503 68.7 1.5e-208 723.0
Cmo12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 6.4e-159 558.1
Cmo05g00005 . 3 475 Aldehyde Dehydrogenase Gene Family AT3G24503 55.3 2.1e-154 543.1
Cmo11g00105 . 68 552 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 4.7e-154 542.0
Cmo11g00105 . 1 552 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 4.2e-257 884.4
Cmo12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 76.8 3.2e-249 858.2
Cmo05g00005 . 8 475 Aldehyde Dehydrogenase Gene Family AT3G48000 79.1 8.7e-231 797.0
Cmo10g00644 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.5 1.1e-161 567.4
Cmo11g00602 . 17 501 Aldehyde Dehydrogenase Gene Family AT3G48000 52.8 3.7e-157 552.4
Cmo12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 1.9e-169 592.8
Cmo11g00105 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 6.7e-167 584.3
Cmo05g00005 . 3 319 Aldehyde Dehydrogenase Gene Family AT1G23800 81.1 3.5e-155 545.4
Cmo10g00644 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.6 4.8e-104 375.6
Cmo11g00602 . 17 345 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 5.8e-102 368.6
Cmo01g01433 CST 3 485 Aldehyde Dehydrogenase Gene Family AT4G34240 63.4 1.7e-181 633.3
Cmo09g00776 CST 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 62.6 5.9e-179 624.8
Cmo09g00775 . 66 523 Aldehyde Dehydrogenase Gene Family AT4G34240 64.0 4.1e-172 602.1
Cmo09g00775 . 111 521 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 3.7e-176 615.1
Cmo01g01433 CST 73 483 Aldehyde Dehydrogenase Gene Family AT1G44170 71.0 8.2e-176 614.0
Cmo09g00776 CST 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 1.2e-174 610.1
Cmo16g00705 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G36250 61.5 2.3e-182 636.0
Cmo02g01283 . 5 497 Aldehyde Dehydrogenase Gene Family AT4G36250 53.8 5.0e-153 538.5
Cmo20g00311 . 39 553 Aldehyde Dehydrogenase Gene Family AT1G79440 75.0 6.8e-228 787.3
Cmo02g00667 . 29 447 Aldehyde Dehydrogenase Gene Family AT1G79440 55.2 4.5e-147 518.8
Cmo11g01452 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 84.3 5.3e-245 844.3
Cmo03g00888 . 211 615 Aldehyde Dehydrogenase Gene Family AT2G14170 69.4 1.9e-170 596.7
Cmo10g00162 . 1 531 Aldehyde Dehydrogenase Gene Family AT1G74920 76.1 2.6e-245 845.1
Cmo10g00162 . 1 533 Aldehyde Dehydrogenase Gene Family AT3G48170 76.7 4.8e-247 850.9
Cmo12g01175 . 72 567 Aldehyde Dehydrogenase Gene Family AT2G24270 90.3 1.9e-267 918.7
Cmo05g01265 . 23 143 Aldehyde Dehydrogenase Gene Family AT2G24270 81.1 2.2e-50 197.6
Cmo13g00961 . 32 590 Aldehyde Dehydrogenase Gene Family AT5G62530 75.2 5.2e-255 877.5
Cmo17g00356 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.0 2.3e-277 951.8
Cmo08g01242 CST 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 74.3 2.5e-271 931.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011636 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00961 Cmo_Chr13 FPKM 29.261265 30.737106 26.880688 27.869925 31.358742 27.679562 31.406092 27.777803 28.434303 26.407951