Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00963 ATGGAAGCTGCTGCTGCTCCTGCTTTTGGCCGTCCAAGGCCTGTCGTCAAGCCCGAGAAGCCTGCCGGAGATAGCGACGACGATCGGAATTCTCCCTCTAACCAATCTCTCCTTATTAAGAAAGAGAACCACGGAAAAGAAGAGCATGAAAGTGAAGATAAAACGAGCAACTCATCCGATCAAAAGGATTTAAGCTGCACCAAGATTCAGGAAGAACAATTGGAATCGGCGCGAACAGAGATGGGGGAAGTGAGAGAAGAAAACCAGAGACTAAAAATGAGTTTAGGTCAAATCATGAAGGATTACGAAGCCCTAAAAATGCAATTCCTGGGGATTGTCGGACGGGAAGCGAAGAAATTACCAGAACACGACAAGGAACAACGACAGCGTCCCCATGATGATCAAACTGAGGAAACTGATCTGGTTTCCTTAACGCTTGGGAGATACCCAATGGCGGAGAAGAAGAAGGCGGCCGAGGAGAAGAATATCAATGGAGGCGACAAGGAAGAAGCTGTCAAACAGGCTTTATCTCTTGGTCTGAATTGCAAATTCGAGCAGGAATCAACGCCGGCGACTGTTAAAGAAGCTCATTCCCCCAATCGGAGTTTAACAATTAGCGCTGATCATGAAACGAAGGAGGATGCTGGCGAGACAAATTGGCCGCCGAGTAAAGGATTGAAGACGATGCGAAGCGCCGACGATGATGCTCTCCCGCCCAATCCGCCCAAGCGCGCTCGGGTCTGTGTTAGAGCCCGATGCGAAACCACCACGATGAACGATGGGTGCCAATGGCGGAAATACGGGCAAAAGATAGCGAAAGGAAACCCCTGTCCACGAGCATACTACCGCTGCACAGGCTCGCCGACATGTCCTGTTAGAAAACAGGTCCAGAGATGCGCCGATGACATGTCGATTTTAATAACTACCTATGAAGGTAACCATAACCACCCATTACCAGCCTCTGCCACCGCCATGGCTTCCACCACCTCCGCCGCTGCTTCCATGCTCCTCTCTGGCTCCTCCACCTCCTCTGCTCCAAACACGACGGCGGCGGCCTCCTCCTCCTCCTCCTCATCTAACCACGCCCTAAGCTTTTACTCAAATTCAAAACAGAACTTTTACTTACCGAATAACTCCTCGATCATCTCATCCACTTCCCCAACTCACCCAACAATCACTTTGGATCTCACTTCAAATCCTTCTTCGACCTCAAATCCCTCGACCCATTTTGGTAAATTCCCATCCAGTTTCCCCAATTCTCGCTACCCTTTTACCAGTCAACTCGATTTCGGATCTTCCAGAAACAATGTCTTGTCGTGGAATAACGGCGTTCTTAGTTACAACAGAAATAGCCACCCCGCTACTACACCCACTAATAATATCTATCAAAATTACATCCAACACCAACGAAACACCGCCATGTCACTGCCACATCAGCAACCGCCATTACCCGACACAATCGCCGCCGCCACTAAGGCCATCACAGCCGACCCCAGCTTCCAATCTGCTCTCGCCGCCGCTCTCACATCCATCATCGGCTCTGGGGGCGCCGGCACCGGTACCGTAAAGTCATCGGCAAGAAGTGAACAACCATTGTTTCAGTTGACATCGACCGCAACGACCACGACAAATAAAGGGAATGGATGTGGGACGAGCTTCTTGAGCAATATTACGACGGCAACGCCAAGTAATTCTCCGCCGACGGGAAACATGGCATTTGTTCCAGCAAGTTCATTGCCGTTTTCGAATCCGAAGAGTGCATCGGCGTCGCCAGAGCTTAACCTTTCAGCAATGGGGAAGTCGCCGGGAAAATGGATTAAGACCATATTGTTTGGGAAGAAATCTTCCAAATCCAATCTTTCCAAGGGCAGAGAGAGAAATGGAAATGGGAAAGAAGTATTGGTTTCTACCAAGGCATCAGAGACGACTTCTGTTATCAGTCATCCTGTAGCTTCACATCCAACCCCAAATGCCATCGATACAAATGAAGGCGTGTTAAAAATTACCAACAATGAGTCCGCTAATGTGTCGCATGAACGATCAATATCAATCCCAGGAAATCAAGATGCCGAAATTCAAGGATCTGCCTGCCAAGATGCACCATCTGATTCTGAGAGAATCCGTGAAGAGGAGGCTGCAACTAAGGCTCAAGCTGCTTTTCGCGGTTATTTGGCTCGCCGAGCATTTCGGGCCCTCAAAGGTATCATTAGGCTGCAGGCACTTATTCGTGGTCATTTGGTAAGGAGACAAGCTGTTGCTACTCTATGTTGTATGCTCGGAATTGTCACGTTTCAGGCTATTGCTCGGGGAAGAAGAGTAAGGCTTTCTGATGTAGGGTTTGAAGTGCAAAACAATTGTAGATTAGTGCAGCCACAGGATCAACCGTTAGTGGATCCTGCTGGAGTAAGTCTCTCTACACGAATGGCGAAACTTTCTGCAAATGCTTTCACTATGAAGCTTGCTTCATCTACAACTGCAAAGCCTATGCAACTCTATTTTGATAATGGAGATGAAAATTCAGTCATGAAATGGTTAGAACGCTGGTCGCATTCTAGATTTTGGAAACCGATTCCTCACGTAAAAAAAGCTCCAGAGACGAAATCTCAAAGAAGGCTGAGTACTGGTCAAACTGGAGAGGCACATACTGTTAGATCAAAACGCACAAGGAGAGTTCCTTCTGTAAACAACGACGGTGCTGCTGTCCAATCATCTACTGAATTTGAGAAACCGAAACGTAATTTTAGGAAACCCTCGAGTCATTCAGCTGCAGAGCAGGTACAGGACAATCCTCAAATGGAGCTTGAAAAGGTCAAACGGGGTCTGAGAAAGGTCCATAACCCTGTCCTTGATAATCCTGCCGAAAAAGAAGTAGGTGATGAGAAACACAAGGAAAGTTTGGACAAGGCTTCTAATGGTCTAGGCCGTGACGTTTTGGCAAGAGGTACTAGTAATTCTTCTGAGAAGATGAAAAAGGAGGCAATCTCAACGATACCCGTCCAGCCTGACTTGGAAACAACTCCTGAGCCATTACCTGAGCCATTACCGATAAAAGCGATACGTAATGTACCTAATGGTGTTCCAGTTGAAGATTCACAGCCTTTGATTGAGAGTAGTGACAAAGATAAGAACATTGCTGGAGATGAGGCTGCTGTGGAGACTAAGCCTTTGGCAGAGAGCTACCATAAAGATGATATCAATCCATTATCAAATGGAGAATCGAATCACAAGGAAGATTATACTAACAACGAGAACCCGAAATCTGGCAGGAAAGCCTCGACTCCAGCCAAGCAAGAGCGAGTGGAGAATGGGTTGCAGCACAGCCCGACCGTACCTAGCTACATGGCAGCAACTGAATCTGCCAAGGCAAAACTGAGAGCACAAGGATCACCAAGATTTAGACAGGATAATGAAAGAAATAACCTCAACCGACGACATTCTTTACCGTCGCCAACGAATGCTAAAATTAGCTCACAGTCACCCCGAACACAAAGACTTGTTCATTCAGGTGGAAAAGGAGGAAATAAAAATGACAAGGCGCTTCTCGGATCAAGAGACGAAAATGGAAAGGTAATTCAAGCCGACTGGAGAAGGTAA 3594 47.3 MEAAAAPAFGRPRPVVKPEKPAGDSDDDRNSPSNQSLLIKKENHGKEEHESEDKTSNSSDQKDLSCTKIQEEQLESARTEMGEVREENQRLKMSLGQIMKDYEALKMQFLGIVGREAKKLPEHDKEQRQRPHDDQTEETDLVSLTLGRYPMAEKKKAAEEKNINGGDKEEAVKQALSLGLNCKFEQESTPATVKEAHSPNRSLTISADHETKEDAGETNWPPSKGLKTMRSADDDALPPNPPKRARVCVRARCETTTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGNHNHPLPASATAMASTTSAAASMLLSGSSTSSAPNTTAAASSSSSSSNHALSFYSNSKQNFYLPNNSSIISSTSPTHPTITLDLTSNPSSTSNPSTHFGKFPSSFPNSRYPFTSQLDFGSSRNNVLSWNNGVLSYNRNSHPATTPTNNIYQNYIQHQRNTAMSLPHQQPPLPDTIAAATKAITADPSFQSALAAALTSIIGSGGAGTGTVKSSARSEQPLFQLTSTATTTTNKGNGCGTSFLSNITTATPSNSPPTGNMAFVPASSLPFSNPKSASASPELNLSAMGKSPGKWIKTILFGKKSSKSNLSKGRERNGNGKEVLVSTKASETTSVISHPVASHPTPNAIDTNEGVLKITNNESANVSHERSISIPGNQDAEIQGSACQDAPSDSERIREEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVTFQAIARGRRVRLSDVGFEVQNNCRLVQPQDQPLVDPAGVSLSTRMAKLSANAFTMKLASSTTAKPMQLYFDNGDENSVMKWLERWSHSRFWKPIPHVKKAPETKSQRRLSTGQTGEAHTVRSKRTRRVPSVNNDGAAVQSSTEFEKPKRNFRKPSSHSAAEQVQDNPQMELEKVKRGLRKVHNPVLDNPAEKEVGDEKHKESLDKASNGLGRDVLARGTSNSSEKMKKEAISTIPVQPDLETTPEPLPEPLPIKAIRNVPNGVPVEDSQPLIESSDKDKNIAGDEAAVETKPLAESYHKDDINPLSNGESNHKEDYTNNENPKSGRKASTPAKQERVENGLQHSPTVPSYMAATESAKAKLRAQGSPRFRQDNERNNLNRRHSLPSPTNAKISSQSPRTQRLVHSGGKGGNKNDKALLGSRDENGKVIQADWRR 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8331688 8339769 + CmoCh13G009630.1 Cmo13g00963 395018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 118 140 - -
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 40 88 - -
Cmo13g00963 1197 Gene3D - 707 757 - -
Cmo13g00963 1197 ProSiteProfiles IQ motif profile. 709 737 IPR000048 GO:0005515
Cmo13g00963 1197 Pfam IQ calmodulin-binding motif 733 750 IPR000048 GO:0005515
Cmo13g00963 1197 Pfam IQ calmodulin-binding motif 711 730 IPR000048 GO:0005515
Cmo13g00963 1197 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 43 593 IPR044810 GO:0003700
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 862 931 - -
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 948 1197 - -
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 1098 1114 - -
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 948 970 - -
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 1143 1165 - -
Cmo13g00963 1197 Pfam Protein of unknown function (DUF4005) 1082 1175 IPR025064 -
Cmo13g00963 1197 Gene3D WRKY domain 243 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 118 139 - -
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 1034 1061 - -
Cmo13g00963 1197 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 43 593 - -
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 977 991 - -
Cmo13g00963 1197 ProSiteProfiles WRKY domain profile. 253 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo13g00963 1197 Pfam WRKY DNA -binding domain 259 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo13g00963 1197 SMART WRKY_cls 258 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 206 225 - -
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 338 359 - -
Cmo13g00963 1197 Coils Coil 67 94 - -
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 1178 1197 - -
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 1 88 - -
Cmo13g00963 1197 ProSiteProfiles IQ motif profile. 733 755 IPR000048 GO:0005515
Cmo13g00963 1197 SMART iq_5 731 752 IPR000048 GO:0005515
Cmo13g00963 1197 SMART iq_5 708 730 IPR000048 GO:0005515
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 1128 1142 - -
Cmo13g00963 1197 SUPERFAMILY WRKY DNA-binding domain 251 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo13g00963 1197 MobiDBLite consensus disorder prediction 1068 1084 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00963 - - - cmax:111495199 1111.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00963 Cmo18g00095 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01889 Cmo-Chr11:13133736 Cmo13g00963 Cmo-Chr13:8331688 7.43E-47 dispersed
Cmo13g00963 Cmo-Chr13:8331688 Cmo19g00938 Cmo-Chr19:8631530 5.91E-55 dispersed
Cmo10g00198 Cmo-Chr10:885235 Cmo13g00963 Cmo-Chr13:8331688 7.74E-73 wgd
Cmo11g00149 Cmo-Chr11:752417 Cmo13g00963 Cmo-Chr13:8331688 5.91E-58 wgd
Cmo13g00963 Cmo-Chr13:8331688 Cmo18g00095 Cmo-Chr18:647768 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008895 1 3 2 1 1 1 2 0 1 0 0 0 2 1 1 2 0 2 1 0 1 1 1 1 1 0 1 4 0 3 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10865 PF13178 DUF4005 2.20E-18 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00963 Cmo_Chr13 FPKM 3.825909 3.81935 3.645228 4.679479 2.264092 1.494379 1.743288 3.299185 3.956331 5.854163