Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00964 ATGCCCTTCGAGTTTGTCAAAGAAATGCCAAAACCTGCAACAAAGATCAAACTGGATTTCTCTTCTCTGCTTGGTGCACTCTTCTTTACGTGGGTCATCCTCCAGCTTTTTCCTGTTATCTTGACATCGTTGGTATATGAGAAGCAACAGAAACTGAGAATCATGATGAAAATGCATGGGCTTGGTGATGGGCCTTATTGGATGATTTCATACGCTTATTTTCTCACAGTTTCTGCAGTATACATGTTTTGTTTTGTGATGTTTGGTTCAGTGATAGGGCTAAAATTTTTCACAATGAATGACTACAGCATCCAGTTTGTCTTTTATCTCTTATTTATAAATTTGCAAGTCTCCCTAGCCTTTCTAGTTGCTGCCATGTTTTCAACTGTCAAAACTGCTGAAGTTTCGACATATATATGTGTATTCGGAACAGGGCTCTTAGGTGGATTTCTCTTCCAATTTTTTGTTGAAGATCCATCATTCCCACGAGGATGGATCATAGTTATGGAGTTATACCCTGGATTTTTGCTATATCGTGGGCTGTATGAGTTTGCATTTTATTCTTTCACTGGGAATCTAATGGGAACTTATGGGATGCGGTGGAAAGATTTGACTGATAGTATTAATGGAATGAGAGAAGTCTTGATCATTATGCTTGTTGAGTGGATAGTGGTGCTTCTAGTTGCATTCTGGATCGATCGAGGTTTATCGTCAGGAAGTTGGAAGCATCCTTTATTTTTCCTTCAAAGACGTGACAAGAAAGCTCCATCTCAGAATCCTGGTTTGGAAAGGCAAGGATCAGAAGTCTTGGTTCAGATTGATCAACCTGATGTCAAAGAAGAGAGGGATAAGGTTGAGAAGTTGCTGAAGGAAGGAGATCCAAGTCATGTCATCATTTGTGACCATCTCAAAAAGGTATACCGAGGAAAGGATGGGAACCCTGAGAAGTTTGCAGTTAGGGGACTATCTCTTGCTTTGCTTCGAGGAGAATGCTTTGGAATGCTAGGTCCTAATGGTGCAGGAAAGACCTCCTTTATCAGTATGATGATTGGTCTTATAAAACCCACCGCTGGAACAGCCTTTGTCGAAGGTCTGGACATAAGGACCGAAATGGATGGCATATATGCAAGCATGGGTGTTTGTCCACAGCATGACCTGCTATGGGAAACCTTGACAGGAAGGGAGCACCTACTCTTTTATGGCAGACTGAAAAATTTAAAAGATTCTGCTTTAATACAAGCAGTGGAAGAATCTCTCAAGGGGGTCAACCTCTTCCATGGAGGAGTAGCGGATAAACAAGCTGGGGAGTACAGTGGAGGTATGAAGAGGAGGCTTAGTGTTGCTATTTCACTGATTGGAGATCCTAAAGTTGTTTATATGGATGAGCCAAGCACCGGCCTAGATCCAGCTTCAAGAAAAAGTTTATGGAATCTTGTGAAGCGTGCGAAGCAAGATCGAGCAATCATCCTTACTACTCATTCTATGGAAGAGGCGGAAGTCTTGTGCGATCGGATAGGAATTTTTGCAGATGGGAGCCTTCAGTGTATTGGAAATCCAAAAGAGCTTAAAGCCAGATATGGTGGGGCTTATGTATTGACGATGACAACATCTCCTGCTCATGAGGGAGATGTTGAGAACATGGTGAAGCGTTTGGCCTCTGGAGCTAGCAAGATATACCGCTTATCTGGAACCCAAAAATTTGAGCTTCCAAAACACCAGGTTAGGATTGCAGATGTGTTTCAAGCAGTGGAAAATGCCAAAAGCAGGTTTGCAGTATTGGCGTGGGGTTTGGCTGACACCACTTTAGAGGATGTCTTTATCAAAGTTGCTAATGGCGCCGAGTCATCAGATACGCTTTCTTGA 1863 42.4 MPFEFVKEMPKPATKIKLDFSSLLGALFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDGPYWMISYAYFLTVSAVYMFCFVMFGSVIGLKFFTMNDYSIQFVFYLLFINLQVSLAFLVAAMFSTVKTAEVSTYICVFGTGLLGGFLFQFFVEDPSFPRGWIIVMELYPGFLLYRGLYEFAFYSFTGNLMGTYGMRWKDLTDSINGMREVLIIMLVEWIVVLLVAFWIDRGLSSGSWKHPLFFLQRRDKKAPSQNPGLERQGSEVLVQIDQPDVKEERDKVEKLLKEGDPSHVIICDHLKKVYRGKDGNPEKFAVRGLSLALLRGECFGMLGPNGAGKTSFISMMIGLIKPTAGTAFVEGLDIRTEMDGIYASMGVCPQHDLLWETLTGREHLLFYGRLKNLKDSALIQAVEESLKGVNLFHGGVADKQAGEYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKSLWNLVKRAKQDRAIILTTHSMEEAEVLCDRIGIFADGSLQCIGNPKELKARYGGAYVLTMTTSPAHEGDVENMVKRLASGASKIYRLSGTQKFELPKHQVRIADVFQAVENAKSRFAVLAWGLADTTLEDVFIKVANGAESSDTLS 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8344249 8350403 + CmoCh13G009640.1 Cmo13g00964 395019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00964 620 CDD ABC_subfamily_A 297 523 - -
Cmo13g00964 620 ProSitePatterns ABC transporters family signature. 437 451 IPR017871 GO:0005524
Cmo13g00964 620 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 301 535 IPR003439 GO:0005524
Cmo13g00964 620 Gene3D - 286 559 IPR027417 -
Cmo13g00964 620 Pfam ABC-2 family transporter protein 19 230 - -
Cmo13g00964 620 Pfam ABC transporter 320 464 IPR003439 GO:0005524
Cmo13g00964 620 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 2 615 IPR026082 GO:0016021|GO:0055085|GO:0140359
Cmo13g00964 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 526 IPR027417 -
Cmo13g00964 620 PANTHER OS08G0398300 PROTEIN 2 615 - -
Cmo13g00964 620 SMART AAA_5 328 511 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00964 - - - csv:101218105 1031.55
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g00153 Cmo13g00964 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00153 Cmo-Chr11:768840 Cmo13g00964 Cmo-Chr13:8344249 1.74E-73 dispersed
Cmo11g00154 Cmo-Chr11:776211 Cmo13g00964 Cmo-Chr13:8344249 0 dispersed
Cmo13g00964 Cmo-Chr13:8344249 Cmo09g00924 Cmo-Chr9:4835313 8.17E-16 dispersed
Cmo03g00057 Cmo-Chr3:920300 Cmo13g00964 Cmo-Chr13:8344249 1.45E-66 transposed
Cmo11g00151 Cmo-Chr11:761966 Cmo13g00964 Cmo-Chr13:8344249 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g523 . Blo16g00190 . . . Bpe13g00282 Bma06g00181 . Cmo13g00964 . . Cma11g00155 . . Sed08g0202 . Cpe04g01510 Bhi02g00338 Tan09g2142 Cmetu02g1068 . Hepe09g0132 . . Cla06g01602 Cam06g1776 Cec06g1827 Cco06g1835 Clacu06g1738 Cmu06g1683 Cre06g2499 . . Cone13ag0082 . . Csa01g00785 . Cme12g01759 . . Bda11g01693 . . Bpe15g00610 Bma03g00820 . . . Cmo11g00153 Cma13g00934 . . . . . Bhi08g01401 . . Lac10g0365 Hepe07g2289 . . . . . . . . . Lsi06g01480 Csa01g00221 Chy02g02512 Cme02g01898
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00964 Cmo_Chr13 FPKM 22.842546 23.58989 24.90661 24.993917 21.950863 20.626842 21.018772 24.083885 23.036259 20.049213