Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00982 ATGCCGCCGAGACGATATGCTTTTGGACGGGCCGATGAGGCCACCCACCCTGACTCCATTAGAGCCACCTTGGCTGAGTTCATTTCCACTTTCATCTTCGTCTTCGCCGGGGAAGGCTCTGTTCTTGCTCTTGACAAAATTTTCAGTCCAGCAGATTATGGAAGTTATGGCCATGGAGGTTACAGTCGCGGTCACGGTTATGGTCGGAGGAGGACCGACACGGGCCGAGGTGCATCCGATTTAGTTGTGATAGCAATAGCGCACGCATTCGCTCTGTTCTCAGCGGTTGCAGCGAGTATCAACATCTCCGGTGGGCATGTCAATCCGGCTGTGACTTTTGGCGCTCTTCTTGGCGGGAGGATATCACTTATCCGTGGAATTTTCTATTGGGTAGCTCAAATTTTGGGTGCCATCGTCGCTTCACTGCTCTTGAGACTCGCAACCGGTGGCATGAGGCCTATGGGGTTTTTCGTTTCATCAGGGATATCAGAAATGCACGGCTTTCTGCTAGAGATAGTGCTGACGTTCGCCTTGGTGTACACAGTGTACGCAACAGCAATAGACCCAAAGAGAGGCAGTTTGGGGACGATAGCGCCACTGGCAATAGGGTTAATAGTGGGGGCTAATATTCTGGTGGGTGGGGCGTTTGATGGGGCGTGCATGAACCCGGCGAGGGCGTTTGGGCCGTCGTTGGTGGGGTGGAGATGGGACAATCATTGGATCTACTGGATCGGGCCATTGCTGGGAGGTGGGCTTGCTGCGCTTGTTTATGAGTACTTGGTGATTCCTGTTGAGCCTCCTCTGCATACTCACCAGCCCTTGGCTCCGGAGGATTACTAA 840 53.33 MPPRRYAFGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFSPADYGSYGHGGYSRGHGYGRRRTDTGRGASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALLGGRISLIRGIFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISEMHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8400229 8401592 - CmoCh13G009820.1 Cmo13g00982 395037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00982 279 Pfam Major intrinsic protein 14 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo13g00982 279 SUPERFAMILY Aquaporin-like 13 270 IPR023271 -
Cmo13g00982 279 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo13g00982 279 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo13g00982 279 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo13g00982 279 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo13g00982 279 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo13g00982 279 PRINTS Major intrinsic protein family signature 240 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo13g00982 279 PANTHER - 72 279 - -
Cmo13g00982 279 PANTHER - 3 49 - -
Cmo13g00982 279 TIGRFAM MIP: MIP family channel proteins 25 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo13g00982 279 Gene3D Glycerol uptake facilitator protein. 5 265 IPR023271 -
Cmo13g00982 279 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Cmo13g00982 279 CDD MIP 21 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo13g00982 279 PANTHER AQUAPORIN-8 3 49 IPR034294 -
Cmo13g00982 279 PANTHER AQUAPORIN-8 72 279 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01198 Cmo-Chr3:9354988 Cmo13g00982 Cmo-Chr13:8400229 1.39E-104 dispersed
Cmo07g00921 Cmo-Chr7:4427126 Cmo13g00982 Cmo-Chr13:8400229 5.06E-103 dispersed
Cmo13g00982 Cmo-Chr13:8400229 Cmo14g00225 Cmo-Chr14:1039713 9.47E-92 dispersed
Cmo13g00982 Cmo-Chr13:8400229 Cmo18g00087 Cmo-Chr18:583155 7.98E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00982 K09873 - csv:101208863 474.167