Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00993 ATGGAGGAGAAAGGAGTGGATGGTCGTGTAGTAAAGCGTTTGGATTCCGAACGCAGTTCAAATTCGATGAACAGGCAGAGATTTGGGGAAGTGAGTGGAGTGCTATCCATCGAGGAGTTCTTTGAGGACCAAGAAGTGCCTCCATGGAGGAAGCAGCTGACGTTTAGAGCTTTTTTCGTTAGTTTTTGGCTGAGCATTTTGTTCAGCTTCATTGTAATGAAGCTCAACCTGACCACTGGTATTATACCTTCGCTCAACGTATCTGCTGGTCTATTAGGTTTCTTCTTTGTCAAGTCATGGACGAAATTTTTGGAGAGGTCAGGCCTCTTGAGGCAGCCTTTCACCAGGCAGGAGAACACTGTCATCCAAACCTGTGTTGTTGCCTCGTCTGGCATCGCTTTCAGCGGAGGTTTTGGAAGTTACTTATTTGGAATGAGCGAACGGATTGCTCATAGATCATCCGGCAGTAAAGATTTCAAAGATCCATCATTAGGATGGATTATTGGTTTTCTATTTGTTGTTAGCTTTCTTGGCCTCTTCTCAGTTGTACCCTTGCGAAAGATCATGGTCGTTGACTTCAAATTAACTTATCCAAGTGGTACTGCAACTGCTCATTTGATTAATAGTTTCCATACTCCCCGAGGAGCTGCACTAGCAAAGAAACAGGTGAGACTGCTTGGCAGGTTTTTCTCTTTGAGCTTCTTGTGGGGCTTTTTTCAATGGTTCTTTCAAGCTGCAGATGGTTGTGGATTTGCACATTTTCCAACATTTGGGCTCCAAGCACGTGCAAACAGGTTTTACTTCGACTTCTCAGCAACATATATTGGAGTTGGAATGATTTGCCCCCACATAATAAACGTATCGGTGCTCGTTGGAGGAATTATCTCTTGGGGCATAATGTGGCCTCTCATAGAAAATAAAAAGGGTCAATGGTTTAGTGAGAAATTGAGCTCAGATGACCTTAGTGGTCTTGAAGGTTACAAGGTATTTATAGCAATAGCCATAATTCTTGGTGATGGCCTATACAACTTCTTCAAAGTATTGACTCGGACCCTCTCCGGGTTGTTCAGCCAACTTCAACACAAAAGAGAGGCTGAAGATTTTTCCTTGGGAAGTTCATCAAGGTCTGAGTTTTCTTATGATGATGAACGAAGGAAACAACTTTTTCTCAAGGATCAAATACCAATCTGGTTTGCCATTGGAGGCTATGTTGTAATTGCTGCAGTGTCGATTAACACTCTTCCACACATCTTTCCCCAGCTGAAATGGTATTATATTTTGGTCATCTACATCTTTGCTCCTATCTTGGCCTTCTGTAATGCATATGGATGTGGACTCACGGATTGGTCTCTAGCGTCTACTTATGGAAAGCTTGCCATTTTCACAATTGGTGCCTGGGCTGGGCCTTTGCATGGAGGAGTTATTGCTGGTCTAGCAGCTTGTGGGGTCATGATGAATATTGTCTCCACAGCGTCCGACTTAATGCAGGATTTCAAGACCGGCTATCTAACCTTAGCTTCACCCCGCTCCATGTTTGTCAGCCAAGTAGTAGGCACAACAATGGGCTGCATTATTTCCCCTTGTGTCTTTTGGCTCTTCTACAAGGCATTTGATGATCTTGGTCTTCGAACTGGTCAATACCCTGCCCCGAATGCGGTTCTTTTTCGCAACATGTCTGTGTTGGGTGTTGAAGGCCTCTCAAGTCTACCAAAGAATTGTCTTACCTTCTGTTATGTGTTTTTCGCCACCGCCATTTTGGTTAACTTGATTAAAGACTTGATACCAAAAAAGTGGGCAAGGTTCATTCCCTTACCTATGGCAATGGCATTGCCATTCTACTTAGGGCCATACTTTGCAATTGATATGAGCCTTGGAAGCTTGATATTGTTTGTGTGGCAGAAGCTAAACAAAACCAAGGCCGATGCATTTGGTCCAGCCGTCGCATCCGGTTTGATATGTGGGGATGGGATTTGGATGTTGCCTTATTCAATTTTGGCATTGGCGGAAGTCAAGCCACCAATTTGCATGAAGTTCCTATCAAGGGCAACCAACGCAAGAGTAGATAAGTTCCTAGGATCGTAG 2082 43.9 MEEKGVDGRVVKRLDSERSSNSMNRQRFGEVSGVLSIEEFFEDQEVPPWRKQLTFRAFFVSFWLSILFSFIVMKLNLTTGIIPSLNVSAGLLGFFFVKSWTKFLERSGLLRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFGMSERIAHRSSGSKDFKDPSLGWIIGFLFVVSFLGLFSVVPLRKIMVVDFKLTYPSGTATAHLINSFHTPRGAALAKKQVRLLGRFFSLSFLWGFFQWFFQAADGCGFAHFPTFGLQARANRFYFDFSATYIGVGMICPHIINVSVLVGGIISWGIMWPLIENKKGQWFSEKLSSDDLSGLEGYKVFIAIAIILGDGLYNFFKVLTRTLSGLFSQLQHKREAEDFSLGSSSRSEFSYDDERRKQLFLKDQIPIWFAIGGYVVIAAVSINTLPHIFPQLKWYYILVIYIFAPILAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGPLHGGVIAGLAACGVMMNIVSTASDLMQDFKTGYLTLASPRSMFVSQVVGTTMGCIISPCVFWLFYKAFDDLGLRTGQYPAPNAVLFRNMSVLGVEGLSSLPKNCLTFCYVFFATAILVNLIKDLIPKKWARFIPLPMAMALPFYLGPYFAIDMSLGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWMLPYSILALAEVKPPICMKFLSRATNARVDKFLGS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8495819 8500285 + CmoCh13G009930.1 Cmo13g00993 395048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00993 693 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 48 666 IPR004813 GO:0035673
Cmo13g00993 693 Pfam OPT oligopeptide transporter protein 52 665 IPR004813 GO:0035673
Cmo13g00993 693 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 20 692 IPR045035 GO:0035673
Cmo13g00993 693 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL8-RELATED 20 692 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00993 - - - csv:101211969 1244.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03118 Cmo-Chr4:21643174 Cmo13g00993 Cmo-Chr13:8495819 0 dispersed
Cmo11g01603 Cmo-Chr11:11477985 Cmo13g00993 Cmo-Chr13:8495819 0 dispersed
Cmo13g00993 Cmo-Chr13:8495819 Cmo18g01365 Cmo-Chr18:12815949 0 dispersed
Cmo13g00993 Cmo-Chr13:8495819 Cmo18g00078 Cmo-Chr18:522094 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g956 . . . . . . . . Cmo13g00993 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00275 Csa01g00753 Chy12g01359 Cme12g01791 . . . . . . . . . . . . . . . Cpe09g01089 . . . . . . . . Cla01g01460 Cam01g1527 Cec01g1568 Cco01g1616 Clacu01g1552 Cmu01g1442 Cre01g1364 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001400 2 2 2 3 2 2 3 2 2 3 2 2 3 3 3 3 2 1 3 2 3 2 2 1 2 3 2 6 4 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00993 Cmo_Chr13 FPKM 0.0 0.0 0.0 0.0 1.937628 1.257439 1.129977 11.291307 12.5944 9.954919