Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g00999 ATGTCTTCGTCCGGCGGTAACTCTGGCGACGGAGCTGGCGGTGGCGCCGCCTCGCATGGCCCTCAGCTCTTCTTCTGCTATACGTGCAATCGTACGGTAACCATTACTCCCTCATCATCCTCCGATCTTTTGTGCCCCAACTGCAACGATAGCTTCGTTGAAGAAATGGATAGTCCAAACCCTAACCCTAGCCCTGTTCCCAATCCTTTCCTCTCCTTCACATCCGAGGCATTTCCGCCGTTCAGCTCCGGTGGCGGTGGAAATGGAGGTTTCCCGATTATATTCTCCACGACATCATCATCCGGTGGCATTGGCGGTGGCGGTTCTATGATGAATGATCTATCGGCGCTATTGGGAGGCGGTTCTCATCGGTCGTCGTCCTTGCAAGACCCTGACGGTTTTAGTCCCTTGCTCTTCCTCCAGAACTATCTTCAAAGCGCTAATGTTCAATTGGTAATCCAGAACGCATCGGGAGAGGCGTTTCATCCATCTTCCAATTTCAATCTTGGAGATTACTTCTTCGGCCCTGGCCTCGAGCAGTTGATTCAACAACTTGCTGAAAACGATCCGAACCGTTATGGAACCCCTCCCGCTTCAAAGTCGTCGATTGAGGCACTTCCAAATATCAAAATTACGGAGGAATTGTTGGCCTCAGATTCTTCCCAGTGCGCTGTGTGTAAGGATACGTTTGAGCTCAACGAGGAGGCGAAACAGATGCCTTGCAAACACATATATCATGCAGATTGTATCATTCCATGGCTGGAATTGCATAATTCTTGTCCGGTATGTCGATATGAATTGCCCACAGATGATCCTGATTACGAGCAAAGGAATCGTGGGACTTCAGCTCCTAATCGAAGTCAAAGCGAAAGTCAACCCTTTGGTGATTCTTCTATCCGTGGGGAAAATGTTGGTGGAAGCGATCCTAATTCCGACGAGAATTCACCGAGTCAACATGAGCGGAGGGTTAGGAGGATAGCATTTCCTTGGCCATTCAGAGGTTTTGGTTCGGCCGCCGAGACTAGTAACAGCGGAGGTGGCAACAATAGTGGAAATAGCGACGAACCTAGCTCCAGAAATAGGGGAAATCAGAGCTCGTCAGAACCCATGCAGGAAGATCTTGATTGA 1128 49.65 MSSSGGNSGDGAGGGAASHGPQLFFCYTCNRTVTITPSSSSDLLCPNCNDSFVEEMDSPNPNPSPVPNPFLSFTSEAFPPFSSGGGGNGGFPIIFSTTSSSGGIGGGGSMMNDLSALLGGGSHRSSSLQDPDGFSPLLFLQNYLQSANVQLVIQNASGEAFHPSSNFNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSSIEALPNIKITEELLASDSSQCAVCKDTFELNEEAKQMPCKHIYHADCIIPWLELHNSCPVCRYELPTDDPDYEQRNRGTSAPNRSQSESQPFGDSSIRGENVGGSDPNSDENSPSQHERRVRRIAFPWPFRGFGSAAETSNSGGGNNSGNSDEPSSRNRGNQSSSEPMQEDLD 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8520524 8521651 - CmoCh13G009990.1 Cmo13g00999 395054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g00999 375 MobiDBLite consensus disorder prediction 278 313 - -
Cmo13g00999 375 MobiDBLite consensus disorder prediction 273 375 - -
Cmo13g00999 375 SMART ring_2 223 263 IPR001841 -
Cmo13g00999 375 MobiDBLite consensus disorder prediction 337 375 - -
Cmo13g00999 375 Pfam Ring finger domain 222 264 IPR001841 -
Cmo13g00999 375 SUPERFAMILY RING/U-box 204 271 - -
Cmo13g00999 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 15 341 - -
Cmo13g00999 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 15 341 - -
Cmo13g00999 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 270 IPR013083 -
Cmo13g00999 375 Pfam zinc-ribbon 22 56 IPR039525 GO:0061630
Cmo13g00999 375 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Cmo13g00999 375 CDD RING-H2_RNF126_like 222 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g00999 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101205252 609.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01740 Cmo-Chr1:12991049 Cmo13g00999 Cmo-Chr13:8520524 1.20E-24 dispersed
Cmo02g01194 Cmo-Chr2:7148547 Cmo13g00999 Cmo-Chr13:8520524 1.32E-47 dispersed
Cmo03g00284 Cmo-Chr3:4080281 Cmo13g00999 Cmo-Chr13:8520524 2.64E-31 dispersed
Cmo04g01742 Cmo-Chr4:8810389 Cmo13g00999 Cmo-Chr13:8520524 1.32E-24 dispersed
Cmo04g02348 Cmo-Chr4:17446828 Cmo13g00999 Cmo-Chr13:8520524 4.09E-73 dispersed
Cmo04g02955 Cmo-Chr4:20922011 Cmo13g00999 Cmo-Chr13:8520524 1.36E-33 dispersed
Cmo06g00286 Cmo-Chr6:1428072 Cmo13g00999 Cmo-Chr13:8520524 9.62E-34 dispersed
Cmo07g01240 Cmo-Chr7:6778579 Cmo13g00999 Cmo-Chr13:8520524 1.24E-32 dispersed
Cmo11g01989 Cmo-Chr11:13640304 Cmo13g00999 Cmo-Chr13:8520524 7.41E-12 dispersed
Cmo13g00999 Cmo-Chr13:8520524 Cmo20g00005 Cmo-Chr20:97838 2.21E-46 dispersed
Cmo14g00126 Cmo-Chr14:554519 Cmo13g00999 Cmo-Chr13:8520524 1.07E-34 dispersed
Cmo14g01926 Cmo-Chr14:14284340 Cmo13g00999 Cmo-Chr13:8520524 4.02E-11 dispersed
Cmo15g00223 Cmo-Chr15:1082494 Cmo13g00999 Cmo-Chr13:8520524 3.34E-36 dispersed
Cmo15g00280 Cmo-Chr15:1337886 Cmo13g00999 Cmo-Chr13:8520524 1.36E-25 dispersed
Cmo15g00686 Cmo-Chr15:3362691 Cmo13g00999 Cmo-Chr13:8520524 2.51E-15 dispersed
Cmo17g00894 Cmo-Chr17:8100932 Cmo13g00999 Cmo-Chr13:8520524 8.24E-27 dispersed
Cmo13g00999 Cmo-Chr13:8520524 Cmo15g00815 Cmo-Chr15:4056920 3.69E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g00999 Cmo_Chr13 FPKM 13.538223 13.086654 42.392212 42.68895 337.562866 321.768311 351.110962 2.002309 2.079396 1.650297