Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01006 ATGCTGGCTGATCTCTCCTCCCCTTCCCTTCCTTGCTTTGAGCCTTTGCCTAATTGCTTTGAAAGCAATGGAACCAATACCAAAAGAAAAAGAAGGCCTGCTGGGACTCCAGACCCAGATGCCGAAGTCGTTTCTCTTTCTCCCAAAACCCTATTGGAATCAGATCATTACGTTTGCGAGATCTGTAATCAAGGGTTTCAAAGAGATCAAAATCTACAAATGCATCGACGTCGACATAAGGTGCCGTGGAAGCTCTTGAAGAGAACCGAGCCGACGACCGCGGTTAGAAAACGAGTCTTTGTTTGCCCCGAACCGAGCTGTTTGCACCATAACCCTACTCATGCTTTGGGGGATTTGGTGGGAATAAAGAAACACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTTTGTGAGAAATGTTCTAAAGGCTATGCTGTTCAATCCGATTATAAAGCTCATCTCAAAACATGTGGAACTCGAGGCCATTCCTGCGATTGCGGTCGGGTTTTCTCAAGGGTGGAGAGCTTCATAGAACATCAAGATAGCTGCAAATTGGGTCATCATCATCAACAATCAGAACAAAAGCTTCCATGTTTATCAAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTCAACAAAAACCATACAATAATTCCCCAAAGGATCATTACCCACCATCCACAAAACTTGGAACTTCAACTCTCCAACAATTCAACTTCCATTCACGTATCCGTTTCGCCGAAACGACACGAAAATTACTCGACCCATTTGCAGCTTTCCATTGGTTCGTGCAATTACGATGAGAAAAACGACGACGGCGACGACGATCATGATGAGAAAACAAGAAATGGGTTGGACTTTTTGAAGGTCAAAGAGGAAGCTAAAGAGCAAATGAGAGTAGCAATGGAAGAGAAAGCTATAGCTGAAGAAGCAAGAAATGAAGCAAAGAAGCAAATTGAAATAGCTGAAAAGGAGTTAGCCAATGCGAAGAGAATGAGACAAGAAGCACAGGGTGAGCTACAAAGAGCTCTTGCTTTGAAAGAACATGCCATGAAGCAAATCAACTCCACCATTCTTCAAATCACTTGTCAAGTTTGTAGGCAACATTTTGAGCCATTCCCAACAATTTGA 1158 42.75 MLADLSSPSLPCFEPLPNCFESNGTNTKRKRRPAGTPDPDAEVVSLSPKTLLESDHYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEPTTAVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHHQQSEQKLPCLSRTASSPTPSPSSDTNFSFFNKNHTIIPQRIITHHPQNLELQLSNNSTSIHVSVSPKRHENYSTHLQLSIGSCNYDEKNDDGDDDHDEKTRNGLDFLKVKEEAKEQMRVAMEEKAIAEEARNEAKKQIEIAEKELANAKRMRQEAQGELQRALALKEHAMKQINSTILQITCQVCRQHFEPFPTI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8563956 8565922 + CmoCh13G010060.1 Cmo13g01006 395061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01006 385 SMART c2h2final6 136 163 IPR013087 -
Cmo13g01006 385 SMART c2h2final6 57 79 IPR013087 -
Cmo13g01006 385 SMART c2h2final6 100 130 IPR013087 -
Cmo13g01006 385 PANTHER OS03G0310200 PROTEIN 14 380 IPR039288 GO:0009630
Cmo13g01006 385 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Cmo13g01006 385 MobiDBLite consensus disorder prediction 195 217 - -
Cmo13g01006 385 MobiDBLite consensus disorder prediction 23 43 - -
Cmo13g01006 385 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 14 380 - -
Cmo13g01006 385 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cmo13g01006 385 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cmo13g01006 385 Gene3D Classic Zinc Finger 35 100 - -
Cmo13g01006 385 Coils Coil 300 362 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g01006 Cmo18g00067 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02246 Cmo-Chr4:16801358 Cmo13g01006 Cmo-Chr13:8563956 2.37E-97 dispersed
Cmo13g01006 Cmo-Chr13:8563956 Cmo13g01208 Cmo-Chr13:9482716 2.85E-160 dispersed
Cmo13g01006 Cmo-Chr13:8563956 Cmo18g00067 Cmo-Chr18:451754 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10866 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01006 K25871 - csv:101210748 646.736