Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01011 ATGGCTCTGGTTCGTGATCGCCGCCAGTTGAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGCTTCCCTCTCCCTCTCCCTCCATCCTCCGCTGCTGCTCCTGCCGCCACAGCCGCCGCCGCCGCTCCCGCTGCCTCTGACCTCGAAAAGCTTCAAGTCCTCGGCCATGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAAGCGTACCTCCGCAACCTACGCTCTTAAGGTTGTCCACGGCGACTGCGATCCAACCGTTCGTCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACTGACTCTCCTTACGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTTACGATTTTGATGGAATATATGGATCTAGGATCGCTTGATTCGCTCTTGAAGAAGAACTCGACGTTGTCAGAAGCGACGCTCGCTCACGTCGCGCGTCAGGTTCTTAACGGACTTCACTATCTTCACTCTCACAAAATCATTCATCGGGATATTAAGCCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAGATCATGTGCCGGACTTTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGACACTTACGGCGGAAATTACAACGGTTACGCCGGCGACATATGGAGTTTGGGGCTTACTCTTCTGGAGCTCTATTTAGGTCATTTTCCTTTCCTACCGCCTGGTCAGAGACCAGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAGCCGCCGACGCTGCCGGAGGACGCGTCGGAGGACTTTCGGAGCTTCGTCGAGTGTTGCTTGCAGAAGGAATCGAGCAAGAGGTGGACGGTGGCGCAGCTGTTGACACATCCGTTTGTGTGCAAGGAATCGAGATCTGATCGGTGA 960 54.9 MALVRDRRQLNLRLPDLSDCRPRFPLPLPPSSAAAPAATAAAAAPAASDLEKLQVLGHGNGGTVYKVRHKRTSATYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVARQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPDTYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEDFRSFVECCLQKESSKRWTVAQLLTHPFVCKESRSDR 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8596536 8597495 + CmoCh13G010110.1 Cmo13g01011 395066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01011 319 ProSiteProfiles Protein kinase domain profile. 50 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01011 319 SMART serkin_6 50 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01011 319 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 316 - -
Cmo13g01011 319 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 316 - -
Cmo13g01011 319 Pfam Protein kinase domain 51 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01011 319 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Cmo13g01011 319 SUPERFAMILY Protein kinase-like (PK-like) 48 313 IPR011009 -
Cmo13g01011 319 Gene3D Phosphorylase Kinase; domain 1 33 130 - -
Cmo13g01011 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Cmo13g01011 319 Gene3D Transferase(Phosphotransferase) domain 1 132 319 - -
Cmo13g01011 319 CDD PKc_MAPKK_plant_like 49 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01011 K20604 MKK9; mitogen-activated protein kinase kinase 9 [EC:2.7.12.2] - csv:101203133 570.852
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00767 Cmo-Chr10:3558589 Cmo13g01011 Cmo-Chr13:8596536 1.43E-64 dispersed
Cmo11g00726 Cmo-Chr11:3514026 Cmo13g01011 Cmo-Chr13:8596536 8.23E-72 dispersed
Cmo13g01011 Cmo-Chr13:8596536 Cmo14g00685 Cmo-Chr14:3500450 5.14E-45 dispersed
Cmo13g01011 Cmo-Chr13:8596536 Cmo01g00026 Cmo-Chr1:97615 2.33E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g168 . . . . . . . . Cmo13g01011 . . . . . . Cpe20g00165 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01809 . . . . . . . . Cma13g00976 . . . . . Bhi08g01328 . . . . . . Cla04g01028 Cam04g1070 Cec01g1584 Cco01g1633 Clacu04g1097 Cmu04g1081 Cre01g1381 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00767 CST 28 357 MAP Kinase Kinase Gene Family AT4G26070 69.7 4.1e-133 471.9
Cmo11g00726 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 68.1 1.9e-130 463.0
Cmo12g01353 . 27 363 MAP Kinase Kinase Gene Family AT4G26070 63.6 1.7e-118 423.3
Cmo05g01376 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 55.0 6.6e-107 384.8
Cmo10g00767 CST 1 330 MAP Kinase Kinase Gene Family AT4G29810 68.1 1.1e-130 463.8
Cmo11g00726 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 67.5 1.4e-130 463.4
Cmo05g01376 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.2 4.1e-109 392.1
Cmo12g01353 . 1 322 MAP Kinase Kinase Gene Family AT4G29810 61.0 2.6e-108 389.4
Cmo12g01310 . 10 348 MAP Kinase Kinase Gene Family AT4G29810 52.1 4.8e-94 342.0
Cmo14g00685 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 80.1 6.9e-230 793.9
Cmo01g00026 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 69.1 3.5e-130 462.2
Cmo13g01011 . 48 317 MAP Kinase Kinase Gene Family AT1G51660 54.8 2.1e-82 303.5
Cmo01g00026 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 69.6 1.1e-130 463.8
Cmo13g01011 . 48 313 MAP Kinase Kinase Gene Family AT3G21220 54.9 1.4e-83 307.4
Cmo05g01376 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 83.7 1.4e-168 589.7
Cmo12g01310 . 1 378 MAP Kinase Kinase Gene Family AT5G56580 70.5 5.2e-147 518.1
Cmo10g00767 CST 7 356 MAP Kinase Kinase Gene Family AT5G56580 58.4 4.7e-116 415.2
Cmo11g00726 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 57.3 1.4e-115 413.7
Cmo12g01353 . 1 352 MAP Kinase Kinase Gene Family AT5G56580 52.8 9.0e-99 357.8
Cmo13g01011 . 1 311 MAP Kinase Kinase Gene Family AT1G18350 62.8 3.5e-107 385.6
Cmo01g00026 . 75 334 MAP Kinase Kinase Gene Family AT1G18350 52.5 1.6e-75 280.4
Cmo13g01011 . 1 299 MAP Kinase Kinase Gene Family AT3G06230 50.5 2.9e-79 292.7
Cmo13g01011 . 1 311 MAP Kinase Kinase Gene Family AT1G73500 66.3 1.9e-113 406.4
Cmo01g00026 . 75 334 MAP Kinase Kinase Gene Family AT1G73500 52.8 1.3e-77 287.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74798 PF00069 Pkinase 2.60E-65 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g01011 Cmo_Chr13 FPKM 16.882696 18.526604 1.302749 1.558468 3.37628 4.157005 4.043038 11.501385 11.08359 10.844225