Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g01011 | ATGGCTCTGGTTCGTGATCGCCGCCAGTTGAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGCTTCCCTCTCCCTCTCCCTCCATCCTCCGCTGCTGCTCCTGCCGCCACAGCCGCCGCCGCCGCTCCCGCTGCCTCTGACCTCGAAAAGCTTCAAGTCCTCGGCCATGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAAGCGTACCTCCGCAACCTACGCTCTTAAGGTTGTCCACGGCGACTGCGATCCAACCGTTCGTCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACTGACTCTCCTTACGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTTACGATTTTGATGGAATATATGGATCTAGGATCGCTTGATTCGCTCTTGAAGAAGAACTCGACGTTGTCAGAAGCGACGCTCGCTCACGTCGCGCGTCAGGTTCTTAACGGACTTCACTATCTTCACTCTCACAAAATCATTCATCGGGATATTAAGCCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAGATCATGTGCCGGACTTTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGACACTTACGGCGGAAATTACAACGGTTACGCCGGCGACATATGGAGTTTGGGGCTTACTCTTCTGGAGCTCTATTTAGGTCATTTTCCTTTCCTACCGCCTGGTCAGAGACCAGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAGCCGCCGACGCTGCCGGAGGACGCGTCGGAGGACTTTCGGAGCTTCGTCGAGTGTTGCTTGCAGAAGGAATCGAGCAAGAGGTGGACGGTGGCGCAGCTGTTGACACATCCGTTTGTGTGCAAGGAATCGAGATCTGATCGGTGA | 960 | 54.9 | MALVRDRRQLNLRLPDLSDCRPRFPLPLPPSSAAAPAATAAAAAPAASDLEKLQVLGHGNGGTVYKVRHKRTSATYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVARQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPDTYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEDFRSFVECCLQKESSKRWTVAQLLTHPFVCKESRSDR | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8596536 | 8597495 | + | CmoCh13G010110.1 | Cmo13g01011 | 395066 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g01011 | 319 | ProSiteProfiles | Protein kinase domain profile. | 50 | 311 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo13g01011 | 319 | SMART | serkin_6 | 50 | 311 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo13g01011 | 319 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 5 | 316 | - | - | |
Cmo13g01011 | 319 | PANTHER | SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED | 5 | 316 | - | - | |
Cmo13g01011 | 319 | Pfam | Protein kinase domain | 51 | 311 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo13g01011 | 319 | ProSitePatterns | Protein kinases ATP-binding region signature. | 56 | 79 | IPR017441 | GO:0005524 | |
Cmo13g01011 | 319 | SUPERFAMILY | Protein kinase-like (PK-like) | 48 | 313 | IPR011009 | - | |
Cmo13g01011 | 319 | Gene3D | Phosphorylase Kinase; domain 1 | 33 | 130 | - | - | |
Cmo13g01011 | 319 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 168 | 180 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo13g01011 | 319 | Gene3D | Transferase(Phosphotransferase) domain 1 | 132 | 319 | - | - | |
Cmo13g01011 | 319 | CDD | PKc_MAPKK_plant_like | 49 | 311 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00767 | Cmo-Chr10:3558589 | Cmo13g01011 | Cmo-Chr13:8596536 | 1.43E-64 | dispersed | |
Cmo11g00726 | Cmo-Chr11:3514026 | Cmo13g01011 | Cmo-Chr13:8596536 | 8.23E-72 | dispersed | |
Cmo13g01011 | Cmo-Chr13:8596536 | Cmo14g00685 | Cmo-Chr14:3500450 | 5.14E-45 | dispersed | |
Cmo13g01011 | Cmo-Chr13:8596536 | Cmo01g00026 | Cmo-Chr1:97615 | 2.33E-107 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74798 | PF00069 | Pkinase | 2.60E-65 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g01011 | K20604 | - | csv:101203133 | 570.852 |