Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01011 ATGGCTCTGGTTCGTGATCGCCGCCAGTTGAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGCTTCCCTCTCCCTCTCCCTCCATCCTCCGCTGCTGCTCCTGCCGCCACAGCCGCCGCCGCCGCTCCCGCTGCCTCTGACCTCGAAAAGCTTCAAGTCCTCGGCCATGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAAGCGTACCTCCGCAACCTACGCTCTTAAGGTTGTCCACGGCGACTGCGATCCAACCGTTCGTCGCCAGGTTTTCAGAGAGATGGAGATTCTCCGCCGTACTGACTCTCCTTACGTCGTTCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTTACGATTTTGATGGAATATATGGATCTAGGATCGCTTGATTCGCTCTTGAAGAAGAACTCGACGTTGTCAGAAGCGACGCTCGCTCACGTCGCGCGTCAGGTTCTTAACGGACTTCACTATCTTCACTCTCACAAAATCATTCATCGGGATATTAAGCCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAGATTGCCGATTTTGGAGTTAGTAAGATCATGTGCCGGACTTTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCGGAGCGGTTCGATCCGGACACTTACGGCGGAAATTACAACGGTTACGCCGGCGACATATGGAGTTTGGGGCTTACTCTTCTGGAGCTCTATTTAGGTCATTTTCCTTTCCTACCGCCTGGTCAGAGACCAGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAGCCGCCGACGCTGCCGGAGGACGCGTCGGAGGACTTTCGGAGCTTCGTCGAGTGTTGCTTGCAGAAGGAATCGAGCAAGAGGTGGACGGTGGCGCAGCTGTTGACACATCCGTTTGTGTGCAAGGAATCGAGATCTGATCGGTGA 960 54.9 MALVRDRRQLNLRLPDLSDCRPRFPLPLPPSSAAAPAATAAAAAPAASDLEKLQVLGHGNGGTVYKVRHKRTSATYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLSEATLAHVARQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPDTYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPPGQRPDWATLMCAICFGEPPTLPEDASEDFRSFVECCLQKESSKRWTVAQLLTHPFVCKESRSDR 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8596536 8597495 + CmoCh13G010110.1 Cmo13g01011 395066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01011 319 ProSiteProfiles Protein kinase domain profile. 50 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01011 319 SMART serkin_6 50 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01011 319 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 5 316 - -
Cmo13g01011 319 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 5 316 - -
Cmo13g01011 319 Pfam Protein kinase domain 51 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01011 319 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Cmo13g01011 319 SUPERFAMILY Protein kinase-like (PK-like) 48 313 IPR011009 -
Cmo13g01011 319 Gene3D Phosphorylase Kinase; domain 1 33 130 - -
Cmo13g01011 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Cmo13g01011 319 Gene3D Transferase(Phosphotransferase) domain 1 132 319 - -
Cmo13g01011 319 CDD PKc_MAPKK_plant_like 49 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00767 Cmo-Chr10:3558589 Cmo13g01011 Cmo-Chr13:8596536 1.43E-64 dispersed
Cmo11g00726 Cmo-Chr11:3514026 Cmo13g01011 Cmo-Chr13:8596536 8.23E-72 dispersed
Cmo13g01011 Cmo-Chr13:8596536 Cmo14g00685 Cmo-Chr14:3500450 5.14E-45 dispersed
Cmo13g01011 Cmo-Chr13:8596536 Cmo01g00026 Cmo-Chr1:97615 2.33E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74798 PF00069 Pkinase 2.60E-65 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01011 K20604 - csv:101203133 570.852