Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01021 ATGCAGATTAGGATGCAACTGCAAGCTCGTAGGATTCAGTTAATTTTCTTAATTATATGTCTATGCTCTTTTTTCATCAACGCTCGTCCGTTTCTCATTGTCATCTCTCAAGATGACCTCAAGGATGCTGCGTCGCCCGACGACTCCTCCGATTCAGCGAACTACGACTCCGCCGAGTGGGACGAGTTCGGGGAGCCTGAATCTCAAAACGCCGCCCAGGAGCTTGACCCCGGTACTTGGCGCCCGATTTTTGAACCGGATTCTCCCGCCTCTGACCCCGACGCGCCGGAGGATCTGTACTACACTGCGTTAGGGAAGATGATGACAGCGGTGAGCTCTGGTGACCTGAGGTTGATGGAGGATGCGGTAGGGGATATTGATCAAGTTGCGGTGGAGAGTGGGGATCCGCACGCGCAATCGGTGCTAGGGTTATTGTATGGAATGGGGATAATGAAGGAGACGAATAAGGCTAAGGCGTTTATGTATCATTATTTTGCCGCGGAAGGGAATAAGCAATCTAAGATGGCTCTTGCATATAGTTACTTCAGGCAAGAAATGTATGAAAAAGCAGTCAAGCTTTATGCCGAGTTAGCAGAGGTAGCCATTAATAGTTTATTAGTTTCCAAGGATTCTCCAGTAATTGAACCTGTGAGGATCCATAATGGAGCAGAGGAGAACAAGCAGGCCTTGAGAAAGTCTCGAGGAGAGGAGGACGAGGACTTCCAAATTTTGGAATATCAGGCGCAGAAGGGTAATGCAGGAGCCATGTATAGAATTGGGCTGTTTTACTACTTTGGACTGAGAGGGTTGAGGCGTGATCATGCAAAAGCACTGATCTGGTTTTCCAAGGCCGTGGATAAAGGTGAACCAAAGTCTATGGAACTACTTGGAGAGATATATGCAAGGGGCGCCGGAGTCGAAAGGGATTATACTAAGGCACTTCAATGGCTAACTCGTGCATCCAAGCATCCATCATTTTCTGCTTATAATGGCATTGGATATTTATACGTTAAGGGTTATGGAGTGGAGAAAAACTTTACCAAGGCCAAGGAGTACTTTGAAAAGGCTGCCAATAACGACGAGTCTGGTGGTCATTATAATCTAGGAGTTATGTATCTTAAAGGAATTGGGGTGAAGAGAGATGTGAAGAAGGCATGTACTCATTTTATAGTGGCTGCAAATGCTGGACAACCAAAGGCATTCTACCAGCTGGCGAAGATGTTTCATACTGGTGTTGGGCTCAAGAGGAACATTCCTATGGCTAGTGCTTTATACAAATTAGTAGCTGAACGAGGGCCTTGGAGTTCATTGTCTAGATGGGCATTGGAATCATATCTGAAAAGTGATATTGGCAAGGCATTCTTCTTGTACGCGAGAATGGCTGAGCTAGGATATGAGGTGGCACAAAGCAATGCAGCATGGATACTTGACAAATATGGAGAACAAAGCATGTGTCTGGGAGAATCTGGCTTTTGTACAGATGCAGAACTACATCAGAGAGCTCATTCTCTTTGGTGGCAAGCATCCGAGCAGGGCAACGAACATGCTGCCTTACTGATTGGGGATGCATATTACTACGGTCGGGGAACCGACGTAGATTATGATCGTGCTGCTGAAGCATACATGCATGCTAAATCCCAACTAAATGCACAAGCCATGTTCAACCTTGGTTACATGCATGAACATGGTCTAGGCCTTCCGTTTGACCTTCACCTAGCCAAGCGGTACTATGACCAAGCTCTGGAACTTGATCCAGCTGCCAGGTTGCCAGTCAAGCTGGCCCTAGCAAGCCTGTGGTTAAGGAAGAATCATGCCGACAGTTTTCTGGTCCATGTGATCGATTCGTTGCCAGAAGTGTATCCAAAGATTGATGTATGGGTGGAGGATGTACTGTTGGAGGAAGGAAATGCAACAATTCTAACTCTATTTGCCTGCCTCCTCACTGTCCTATATCTTAGAGAGCGGCAACGGAGGCATGCAGTTGTACGGGCTGCTGCTGCTGCTGAGGCTGTGCCACTCCACCCCAATGATCACGTGGCTGCACAAAATTAA 2052 47.03 MQIRMQLQARRIQLIFLIICLCSFFINARPFLIVISQDDLKDAASPDDSSDSANYDSAEWDEFGEPESQNAAQELDPGTWRPIFEPDSPASDPDAPEDLYYTALGKMMTAVSSGDLRLMEDAVGDIDQVAVESGDPHAQSVLGLLYGMGIMKETNKAKAFMYHYFAAEGNKQSKMALAYSYFRQEMYEKAVKLYAELAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILEYQAQKGNAGAMYRIGLFYYFGLRGLRRDHAKALIWFSKAVDKGEPKSMELLGEIYARGAGVERDYTKALQWLTRASKHPSFSAYNGIGYLYVKGYGVEKNFTKAKEYFEKAANNDESGGHYNLGVMYLKGIGVKRDVKKACTHFIVAANAGQPKAFYQLAKMFHTGVGLKRNIPMASALYKLVAERGPWSSLSRWALESYLKSDIGKAFFLYARMAELGYEVAQSNAAWILDKYGEQSMCLGESGFCTDAELHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTDVDYDRAAEAYMHAKSQLNAQAMFNLGYMHEHGLGLPFDLHLAKRYYDQALELDPAARLPVKLALASLWLRKNHADSFLVHVIDSLPEVYPKIDVWVEDVLLEEGNATILTLFACLLTVLYLRERQRRHAVVRAAAAAEAVPLHPNDHVAAQN 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8639956 8643432 + CmoCh13G010210.1 Cmo13g01021 395076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01021 683 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 8 665 IPR044623 GO:0030433
Cmo13g01021 683 Gene3D Tetratricopeptide repeat domain 234 607 IPR011990 GO:0005515
Cmo13g01021 683 SUPERFAMILY HCP-like 129 199 - -
Cmo13g01021 683 SUPERFAMILY HCP-like 339 473 - -
Cmo13g01021 683 MobiDBLite consensus disorder prediction 43 95 - -
Cmo13g01021 683 Gene3D Tetratricopeptide repeat domain 124 210 IPR011990 GO:0005515
Cmo13g01021 683 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 8 665 - -
Cmo13g01021 683 SUPERFAMILY HCP-like 234 360 - -
Cmo13g01021 683 SUPERFAMILY HCP-like 445 586 - -
Cmo13g01021 683 Pfam Sel1 repeat 327 360 IPR006597 -
Cmo13g01021 683 Pfam Sel1 repeat 136 169 IPR006597 -
Cmo13g01021 683 Pfam Sel1 repeat 291 324 IPR006597 -
Cmo13g01021 683 Pfam Sel1 repeat 365 396 IPR006597 -
Cmo13g01021 683 Pfam Sel1 repeat 254 288 IPR006597 -
Cmo13g01021 683 Pfam Sel1 repeat 402 432 IPR006597 -
Cmo13g01021 683 Pfam Sel1 repeat 447 465 IPR006597 -
Cmo13g01021 683 Pfam Sel1 repeat 516 538 IPR006597 -
Cmo13g01021 683 Pfam Sel1 repeat 550 584 IPR006597 -
Cmo13g01021 683 SMART sel1 550 585 IPR006597 -
Cmo13g01021 683 SMART sel1 136 171 IPR006597 -
Cmo13g01021 683 SMART sel1 362 397 IPR006597 -
Cmo13g01021 683 SMART sel1 514 549 IPR006597 -
Cmo13g01021 683 SMART sel1 253 289 IPR006597 -
Cmo13g01021 683 SMART sel1 398 433 IPR006597 -
Cmo13g01021 683 SMART sel1 290 325 IPR006597 -
Cmo13g01021 683 SMART sel1 326 361 IPR006597 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01021 K14026 SEL1, SEL1L; SEL1 protein - csv:101221047 1216.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g01021 Cmo18g00058 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00046 Cmo-Chr5:168199 Cmo13g01021 Cmo-Chr13:8639956 1.80E-07 dispersed
Cmo13g01021 Cmo-Chr13:8639956 Cmo18g00058 Cmo-Chr18:376736 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g01021 Cmo_Chr13 FPKM 3.045969 4.47822 5.62957 5.463413 4.697723 4.865595 4.891969 2.376476 2.717677 2.6104