Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01029 ATGTGGATGATGGGTTACAATGACGCCGGAGATTTGAACTTCCCCACCGATTCCTTCACTCCTCGCCGCCTTAGGCCTCTCCTTCCTCGCCCTCTCTCTTCTCTTTCCTCCACCGCCGCCGTTAATCCTCCTTTCAACCTTATCCACACCAACGATTTCTTCTCCCAATTTCACCACATGGCCACCGTGACTGATCAGACCAAGAGAGAGTTGAACAACGCGCCACCGCCCGTCGTGGTTAGCTCGCGGTGGAACCCTACGCCGGAGCAGTTGAGAGTGCTGGAGGAATTGTATCGGCGGGGGACTCGAACTCCCTCCGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGAGAACGCCAGAAACGACGTCGTCAGATGGAATCCGCCATCACCGCCGACCACTCCGCTCCCGAACCCGGAATCCTTGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTATATGAAGAACAGACCAAAAACTGGGCGCCCTCTTCCAACTGCACAACACTTCCGGAGGAATCTGCTCCCATTCAACCACCGCCAACCCCTTGCACCACACACCGTGGATGGATCCAATTCCAAAGCCTTGTTCAAAACAACAACAACCCACCCTCCTCCTCCTTGCACTTCATGCATTCTCCCCCCACCACCGCTCTCGACGGCGGAGGAGCCCAGCTCATGATGAACACAGCCCCCATCCCCACCACCACCGCCGCCACCTCCACAGTTACAACAATAATGCACTCAAAATCTCATTCTAATATTGGAGGCTTTGCACCAAATGGGGTGGAAGAATTGGAGGAATCAGAAGAAGCTGAAACCCTTCAACTTTTTCCTTTGTGCAGTGAGTCACGGAATGGTGAGATTAGTGAAGGGAAAAATGGGTTTGAGACGGTGGGAAGTTCAGCTAATATTACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAACTCACCTTAA 1026 51.27 MWMMGYNDAGDLNFPTDSFTPRRLRPLLPRPLSSLSSTAAVNPPFNLIHTNDFFSQFHHMATVTDQTKRELNNAPPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITADHSAPEPGILERKDSGSGRTVYEEQTKNWAPSSNCTTLPEESAPIQPPPTPCTTHRGWIQFQSLVQNNNNPPSSSLHFMHSPPTTALDGGGAQLMMNTAPIPTTTAATSTVTTIMHSKSHSNIGGFAPNGVEELEESEEAETLQLFPLCSESRNGEISEGKNGFETVGSSANITPLQFFEFLPLKNSP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8676452 8679631 + CmoCh13G010290.1 Cmo13g01029 395084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01029 341 MobiDBLite consensus disorder prediction 144 203 - -
Cmo13g01029 341 MobiDBLite consensus disorder prediction 159 173 - -
Cmo13g01029 341 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Cmo13g01029 341 CDD homeodomain 83 143 IPR001356 GO:0003677
Cmo13g01029 341 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 54 339 IPR044555 GO:0003700|GO:0099402
Cmo13g01029 341 MobiDBLite consensus disorder prediction 174 194 - -
Cmo13g01029 341 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 54 339 - -
Cmo13g01029 341 SMART HOX_1 79 146 IPR001356 GO:0003677
Cmo13g01029 341 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Cmo13g01029 341 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Cmo13g01029 341 Gene3D - 81 148 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00316 Cmo13g01029 CCT
Cmo11g00316 Cmo13g01029 ECH
Cmo13g01029 Cmo18g00054 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00716 Cmo-Chr3:6191165 Cmo13g01029 Cmo-Chr13:8676452 2.47E-27 dispersed
Cmo04g03039 Cmo-Chr4:21303097 Cmo13g01029 Cmo-Chr13:8676452 6.17E-29 dispersed
Cmo12g00505 Cmo-Chr12:3110440 Cmo13g01029 Cmo-Chr13:8676452 1.77E-29 dispersed
Cmo13g01029 Cmo-Chr13:8676452 Cmo15g00135 Cmo-Chr15:633045 2.02E-29 dispersed
Cmo14g00462 Cmo-Chr14:2226971 Cmo13g01029 Cmo-Chr13:8676452 2.78E-16 dispersed
Cmo20g00484 Cmo-Chr20:2262359 Cmo13g01029 Cmo-Chr13:8676452 1.95E-30 transposed
Cmo11g00316 Cmo-Chr11:1528835 Cmo13g01029 Cmo-Chr13:8676452 3.75E-47 wgd
Cmo13g01029 Cmo-Chr13:8676452 Cmo18g00054 Cmo-Chr18:346478 1.08E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10869 PF00046 Homeodomain 1.30E-19 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01029 - - cpep:111783016 600.127