Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01029 ATGTGGATGATGGGTTACAATGACGCCGGAGATTTGAACTTCCCCACCGATTCCTTCACTCCTCGCCGCCTTAGGCCTCTCCTTCCTCGCCCTCTCTCTTCTCTTTCCTCCACCGCCGCCGTTAATCCTCCTTTCAACCTTATCCACACCAACGATTTCTTCTCCCAATTTCACCACATGGCCACCGTGACTGATCAGACCAAGAGAGAGTTGAACAACGCGCCACCGCCCGTCGTGGTTAGCTCGCGGTGGAACCCTACGCCGGAGCAGTTGAGAGTGCTGGAGGAATTGTATCGGCGGGGGACTCGAACTCCCTCCGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGAGAACGCCAGAAACGACGTCGTCAGATGGAATCCGCCATCACCGCCGACCACTCCGCTCCCGAACCCGGAATCCTTGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTATATGAAGAACAGACCAAAAACTGGGCGCCCTCTTCCAACTGCACAACACTTCCGGAGGAATCTGCTCCCATTCAACCACCGCCAACCCCTTGCACCACACACCGTGGATGGATCCAATTCCAAAGCCTTGTTCAAAACAACAACAACCCACCCTCCTCCTCCTTGCACTTCATGCATTCTCCCCCCACCACCGCTCTCGACGGCGGAGGAGCCCAGCTCATGATGAACACAGCCCCCATCCCCACCACCACCGCCGCCACCTCCACAGTTACAACAATAATGCACTCAAAATCTCATTCTAATATTGGAGGCTTTGCACCAAATGGGGTGGAAGAATTGGAGGAATCAGAAGAAGCTGAAACCCTTCAACTTTTTCCTTTGTGCAGTGAGTCACGGAATGGTGAGATTAGTGAAGGGAAAAATGGGTTTGAGACGGTGGGAAGTTCAGCTAATATTACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAACTCACCTTAA 1026 51.27 MWMMGYNDAGDLNFPTDSFTPRRLRPLLPRPLSSLSSTAAVNPPFNLIHTNDFFSQFHHMATVTDQTKRELNNAPPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITADHSAPEPGILERKDSGSGRTVYEEQTKNWAPSSNCTTLPEESAPIQPPPTPCTTHRGWIQFQSLVQNNNNPPSSSLHFMHSPPTTALDGGGAQLMMNTAPIPTTTAATSTVTTIMHSKSHSNIGGFAPNGVEELEESEEAETLQLFPLCSESRNGEISEGKNGFETVGSSANITPLQFFEFLPLKNSP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8676452 8679631 + CmoCh13G010290.1 Cmo13g01029 395084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01029 341 MobiDBLite consensus disorder prediction 144 203 - -
Cmo13g01029 341 MobiDBLite consensus disorder prediction 159 173 - -
Cmo13g01029 341 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Cmo13g01029 341 CDD homeodomain 83 143 IPR001356 GO:0003677
Cmo13g01029 341 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 54 339 IPR044555 GO:0003700|GO:0099402
Cmo13g01029 341 MobiDBLite consensus disorder prediction 174 194 - -
Cmo13g01029 341 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 54 339 - -
Cmo13g01029 341 SMART HOX_1 79 146 IPR001356 GO:0003677
Cmo13g01029 341 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Cmo13g01029 341 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Cmo13g01029 341 Gene3D - 81 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01029 - - - cpep:111783016 600.127
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g00316 Cmo13g01029 CCT
Cmo11g00316 Cmo13g01029 ECH
Cmo13g01029 Cmo18g00054 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00716 Cmo-Chr3:6191165 Cmo13g01029 Cmo-Chr13:8676452 2.47E-27 dispersed
Cmo04g03039 Cmo-Chr4:21303097 Cmo13g01029 Cmo-Chr13:8676452 6.17E-29 dispersed
Cmo12g00505 Cmo-Chr12:3110440 Cmo13g01029 Cmo-Chr13:8676452 1.77E-29 dispersed
Cmo13g01029 Cmo-Chr13:8676452 Cmo15g00135 Cmo-Chr15:633045 2.02E-29 dispersed
Cmo14g00462 Cmo-Chr14:2226971 Cmo13g01029 Cmo-Chr13:8676452 2.78E-16 dispersed
Cmo20g00484 Cmo-Chr20:2262359 Cmo13g01029 Cmo-Chr13:8676452 1.95E-30 transposed
Cmo11g00316 Cmo-Chr11:1528835 Cmo13g01029 Cmo-Chr13:8676452 3.75E-47 wgd
Cmo13g01029 Cmo-Chr13:8676452 Cmo18g00054 Cmo-Chr18:346478 1.08E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g212 . . . Bda15g00511 Bpe12g00698 . . . Cmo13g01029 Cmo18g00054 . Cma11g00311 . Car11g00287 Sed12g2115 Cpe20g00149 Cpe04g01371 Bhi02g00135 Tan09g1827 Cmetu02g0991 . Hepe09g0388 . . Cla06g01422 Cam06g1576 Cec06g1636 Cco06g1628 Clacu06g1538 Cmu06g1492 Cre06g2301 Cone2ag0760 . . . Lsi02g00230 Csa01g00712 Chy12g01399 Cme12g01833 Blo13g00175 . . . . . . Bma08g00054 Sed08g2754 . Cmo11g00316 Cma13g00993 Cma18g00071 Car13g00827 Car18g00062 Cpe09g01115 . Bhi08g01290 Tan05g2195 Cmetu12g1142 Lac10g0287 Hepe07g2356 . . Cla04g01050 Cam04g1093 Cec01g1608 Cco01g1654 Clacu04g1119 Cmu04g1103 Cre01g1402 Lsi06g01287 Csa01g00431 Chy02g02313 Cme02g01686
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g01029 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 56.5 3.0e-46 183.3
Cmo11g00316 CCT,ECH 1 140 Wox Gene Family AT3G18010 62.1 1.7e-38 157.5
Cmo06g00062 . 4 226 Wox Gene Family AT3G03660 54.3 3.1e-52 203.0
Cmo14g00462 . 14 243 Wox Gene Family AT3G03660 50.4 2.6e-43 173.3
Cmo16g01322 . 1 275 Wox Gene Family AT4G35550 51.0 7.8e-71 264.6
Cmo06g00143 . 31 268 Wox Gene Family AT4G35550 53.7 9.8e-66 247.7
Cmo01g02079 CST 1 162 Wox Gene Family AT4G35550 67.5 1.3e-54 210.7
Cmo06g00143 . 31 170 Wox Gene Family AT1G20700 55.9 5.9e-39 158.3
Cmo01g02079 CST 38 169 Wox Gene Family AT1G20700 58.5 1.0e-38 157.5
Cmo05g00169 CST 5 173 Wox Gene Family AT1G46480 59.9 1.9e-47 186.4
Cmo12g00505 CST 5 138 Wox Gene Family AT1G46480 62.8 1.7e-43 173.3
Cmo07g00209 CST 1 388 Wox Gene Family AT2G33880 50.5 9.2e-65 245.0
Cmo13g01029 CCT,CST,ECH 1 194 Wox Gene Family AT3G18010 56.5 3.0e-46 183.3
Cmo11g00316 CCT,ECH 1 140 Wox Gene Family AT3G18010 62.1 1.7e-38 157.5
Cmo05g00169 CST 5 173 Wox Gene Family AT1G46480 59.9 1.9e-47 186.4
Cmo12g00505 CST 5 138 Wox Gene Family AT1G46480 62.8 1.7e-43 173.3
Cmo07g00209 CST 1 388 Wox Gene Family AT2G33880 50.5 9.2e-65 245.0
Cmo06g00062 . 4 226 Wox Gene Family AT3G03660 54.3 3.1e-52 203.0
Cmo14g00462 . 14 243 Wox Gene Family AT3G03660 50.4 2.6e-43 173.3
Cmo16g01322 . 1 275 Wox Gene Family AT4G35550 51.0 7.8e-71 264.6
Cmo06g00143 . 31 268 Wox Gene Family AT4G35550 53.7 9.8e-66 247.7
Cmo01g02079 CST 1 162 Wox Gene Family AT4G35550 67.5 1.3e-54 210.7
Cmo06g00143 . 31 170 Wox Gene Family AT1G20700 55.9 5.9e-39 158.3
Cmo01g02079 CST 38 169 Wox Gene Family AT1G20700 58.5 1.0e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004252 3 1 2 3 2 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10869 PF00046 Homeodomain 1.30E-19 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g01029 Cmo_Chr13 FPKM 2.00466 2.409289 0.427659 0.980795 0.824427 0.349298 0.687192 0.478286 0.46567 0.585194