Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g01029 | ATGTGGATGATGGGTTACAATGACGCCGGAGATTTGAACTTCCCCACCGATTCCTTCACTCCTCGCCGCCTTAGGCCTCTCCTTCCTCGCCCTCTCTCTTCTCTTTCCTCCACCGCCGCCGTTAATCCTCCTTTCAACCTTATCCACACCAACGATTTCTTCTCCCAATTTCACCACATGGCCACCGTGACTGATCAGACCAAGAGAGAGTTGAACAACGCGCCACCGCCCGTCGTGGTTAGCTCGCGGTGGAACCCTACGCCGGAGCAGTTGAGAGTGCTGGAGGAATTGTATCGGCGGGGGACTCGAACTCCCTCCGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGGTATGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAGAATCATAAAGCTAGAGAACGCCAGAAACGACGTCGTCAGATGGAATCCGCCATCACCGCCGACCACTCCGCTCCCGAACCCGGAATCCTTGAAAGGAAAGATTCAGGGTCGGGTAGGACAGTATATGAAGAACAGACCAAAAACTGGGCGCCCTCTTCCAACTGCACAACACTTCCGGAGGAATCTGCTCCCATTCAACCACCGCCAACCCCTTGCACCACACACCGTGGATGGATCCAATTCCAAAGCCTTGTTCAAAACAACAACAACCCACCCTCCTCCTCCTTGCACTTCATGCATTCTCCCCCCACCACCGCTCTCGACGGCGGAGGAGCCCAGCTCATGATGAACACAGCCCCCATCCCCACCACCACCGCCGCCACCTCCACAGTTACAACAATAATGCACTCAAAATCTCATTCTAATATTGGAGGCTTTGCACCAAATGGGGTGGAAGAATTGGAGGAATCAGAAGAAGCTGAAACCCTTCAACTTTTTCCTTTGTGCAGTGAGTCACGGAATGGTGAGATTAGTGAAGGGAAAAATGGGTTTGAGACGGTGGGAAGTTCAGCTAATATTACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAACTCACCTTAA | 1026 | 51.27 | MWMMGYNDAGDLNFPTDSFTPRRLRPLLPRPLSSLSSTAAVNPPFNLIHTNDFFSQFHHMATVTDQTKRELNNAPPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITADHSAPEPGILERKDSGSGRTVYEEQTKNWAPSSNCTTLPEESAPIQPPPTPCTTHRGWIQFQSLVQNNNNPPSSSLHFMHSPPTTALDGGGAQLMMNTAPIPTTTAATSTVTTIMHSKSHSNIGGFAPNGVEELEESEEAETLQLFPLCSESRNGEISEGKNGFETVGSSANITPLQFFEFLPLKNSP | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8676452 | 8679631 | + | CmoCh13G010290.1 | Cmo13g01029 | 395084 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g01029 | 341 | MobiDBLite | consensus disorder prediction | 144 | 203 | - | - | |
Cmo13g01029 | 341 | MobiDBLite | consensus disorder prediction | 159 | 173 | - | - | |
Cmo13g01029 | 341 | Pfam | Homeodomain | 82 | 141 | IPR001356 | GO:0003677 | |
Cmo13g01029 | 341 | CDD | homeodomain | 83 | 143 | IPR001356 | GO:0003677 | |
Cmo13g01029 | 341 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 54 | 339 | IPR044555 | GO:0003700|GO:0099402 | |
Cmo13g01029 | 341 | MobiDBLite | consensus disorder prediction | 174 | 194 | - | - | |
Cmo13g01029 | 341 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 54 | 339 | - | - | |
Cmo13g01029 | 341 | SMART | HOX_1 | 79 | 146 | IPR001356 | GO:0003677 | |
Cmo13g01029 | 341 | ProSiteProfiles | 'Homeobox' domain profile. | 87 | 142 | IPR001356 | GO:0003677 | |
Cmo13g01029 | 341 | SUPERFAMILY | Homeodomain-like | 81 | 148 | IPR009057 | - | |
Cmo13g01029 | 341 | Gene3D | - | 81 | 148 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g00316 | Cmo13g01029 | CCT | |
Cmo11g00316 | Cmo13g01029 | ECH | |
Cmo13g01029 | Cmo18g00054 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00716 | Cmo-Chr3:6191165 | Cmo13g01029 | Cmo-Chr13:8676452 | 2.47E-27 | dispersed | |
Cmo04g03039 | Cmo-Chr4:21303097 | Cmo13g01029 | Cmo-Chr13:8676452 | 6.17E-29 | dispersed | |
Cmo12g00505 | Cmo-Chr12:3110440 | Cmo13g01029 | Cmo-Chr13:8676452 | 1.77E-29 | dispersed | |
Cmo13g01029 | Cmo-Chr13:8676452 | Cmo15g00135 | Cmo-Chr15:633045 | 2.02E-29 | dispersed | |
Cmo14g00462 | Cmo-Chr14:2226971 | Cmo13g01029 | Cmo-Chr13:8676452 | 2.78E-16 | dispersed | |
Cmo20g00484 | Cmo-Chr20:2262359 | Cmo13g01029 | Cmo-Chr13:8676452 | 1.95E-30 | transposed | |
Cmo11g00316 | Cmo-Chr11:1528835 | Cmo13g01029 | Cmo-Chr13:8676452 | 3.75E-47 | wgd | |
Cmo13g01029 | Cmo-Chr13:8676452 | Cmo18g00054 | Cmo-Chr18:346478 | 1.08E-119 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10869 | PF00046 | Homeodomain | 1.30E-19 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g01029 | - | - | cpep:111783016 | 600.127 |