Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01032 ATGAAGAACCTCCTCAAGAAGTTCCACATCATGTCCAGTGGTCAGTCAGACGACGCATCCGAAGGGTCTACTTCATCGAGGGGCAGTAAATTAATTGAGTCTTCATCGTCTGATAAGCTGCTATCTCGCTCCCGGCCGACCCATTTTAGCTCTGAGCATAAACCCTTATCGGGGTTATCCGGTTGGTTGAACTCTGTTACAAATAGGCGTAGCCCCAGCCCTCCATCATCTTCGAATCCCACTGCAGGGGAGATAATGGAGCCATCGGATTCAGTATCTAGCAGAGATGCTGCATTGGATACATCTAGGCATGATTCAGGGTCGAGTAACTCGAGGGATCCTGATATAGAGGAAGAGTATCAGATACAGCTTGCTTTGGAAATGAGTGCTAGAGAGGATCCTGAGGCGGCTCAGATTGAGGCTGTGAAGCAGATCAGTTTGGGGTCATGTGATCCTGATAACACTCCAGCTGAAGTTATTGCCTTCAGATATTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTATGACCTATATGGCGTCTTCACCGAGTCCACCTCAGAAAAAATGCCTTCCCTAGTTGATTTGCAAGGAGCACCAATGTCTGGCAGTGTCACTTGGGAAGCAGTTCTGATCAACAAAGCTGCTGATGCTAACTTATTGAAACTTGAACAGACAGCATTGGAGATGGCCATCAAGATGGGGTCAGAATCTCCAATTTCTGTAAATAGTTATTTGGTGCGGAAGCTTGCTGTTTTAGTTTCAGATCATATGGGGGGACCAGTGGGGGATCCTGAAAAGATGTTGATAAAATGGAGAAATCTTAGTTACAGCTTGAAAGCAACCCTTGGCAGTATGGTTTTGCCTCTTGGCTCCCTTACTGTAGGGTTGGCCCGTCATCGTGCATTGTTATTCAAGAGTGAGGTCGTCGTTGATAAGCTGAAACCTTATCTCTCTTCAAAAGCTTTAGGAATAGTTGGTTTGACTAACATGGGGAAAAAAATGTCTCTCCTTGCTAATGCCATGGTGAAAGATTCTCCCAATGGCGTGGGCATTCCTTGTCGGTTGGTAAAAGGACCACAGTACACGGGTTCTGATGATGTGGCAATGAACTTCGTAAAGATTGATGATGGAAGGGAGTACATTGTCGATTTAATGGCAGATCCTGGTGCACTTATTCCAGCTGATGTTGCTGGATCGCATGTAGAGTATGATGGATCCCCTTTTTCAGCCAGTCCACTTTCTAGAGATGTTGATTCCTCTCAGGCAGCATCTTCAAGCAGTGGGGTTGGCAGTTCATTAGAGGAAAATCCATATTTTGGGATATCGGATAGGAAACCAAAGTCCGGGACTCTCAGTGCCACAAAGGAATATGATCCTCCCAATGTCAACAAGGCGCCGTCACGTGATTTTGCTAGCAAACCAAATTATCCTGGCATGCACATTCGATCACCTTCATGGACTGAGGGTGTTAGTTCACCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCACAATACATGATTGATGCTGCCAAAGAGAATCCACGGTTGGCTCAGAAGCTTCATGATGTGTTGCTTGAAAGTGGTGTAGTTGCTCCCCCTAACTTGTTTACCGAGGCATACCCCGACCAAATAGATGTTATCGTTGAGTCTAAGTCACCAACGGAAGACAAGGATCAAAGTAGGAAGGTGCCTGGTCTCTGTGAAAGTGTAGATAAGAAAGATCCTCGTCCAACTAACTTTTTGCCGCCCTTGCCTCAGCCCAGACAGCATTCTAAAGCAAGCCCTACCCATGGCCAACAACTGCACCATAAACCTCTGGAACTAAACCTCTCTCTTGATTCAAGAGAATCATCTGGACAACCTATAGCCTTACCGTTTGAGGTAACTCCAGTGAAGTATGGGAGAAATGTGCCTGTCGCTGCAGCAGCAGCAGCTGCTGCAGCTGTTGTTGCATCATCAATGGTGGTAGCTGCAGCAAAGAATACCGATGCAAATCTCGAAATTCCTGTAGCAGCTGCTGCCACAGCCACTGCTGCTGCAGTGGTTGCAACAACAGCAGCTGTCAACAAGCAATATGAGCAGGTTGAGGCCGATGCTGCTCTTTATGAGCAACGTGGAAGTGGAGATAGGGAGCATGAAGCTTGTGGAGAAAATTCAGAGGGTGAACGAATATCAGATAAATCGGTAGGAAACGAAAGCACAAAATCCGATATTACCCTTGATGATGTTGCTGAATGTGAAATCCCATGGGAAGAAATTTCCTTGGGCGAGCGTATTGGACTTGGATCATATGGGGAGGTCTACCGTGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGATTTCTAGACCAGGATATTTCTGGCGAAACTCTTGAAGAATTCAAAAGTGAGATAGCTAAGTTTGTTATAATTTTCAGTATCTTATGCCGTGATTTCCATTTAAAGGTTCGAATTATGAAAAGGCTTCGGCATCCAAATGTTGTTCTCTTCATGGGAGCTGTGACTCGTGCTCCCCATCTTTCAATTGTTACTGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTACTTCACCGTCCCAACAATCAATTAGACGAACGAAAGCGAATGAGGATGGCCCTTGATGCAGCTCGGGGAATGAATTATTTGCACAATTGCACGCCTGTCGTTGTACACCGTGATTTGAAGTCCCCAAATCTACTTGTCGATAAAAATTGGGTCGTTAAGGTGTGTGATTTTGGTTTATCAAAAATGAAGCATAGCACATTTCTTTCTTCAAGGTCAACAGCAGGAACCGCTGAGTGGATGGCTCCAGAAGTGCTGAGAAATGAACCTTCAGATGAAAAGTGCGATGTCTATAGTTACGGAGTCATACTTTGGGAGCTGTCTACGATGCAACAACCGTGGGGAGGAATGAACCCAATGCAAGTTGTTGGCGCCGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAATATGGATCCTGCCATCGCCGACATTATTAGGAAATGCTGGCAAACCTTGAAGTCTCATGCTTCTAATGGTATAGCTGAGCTAGATCCTATTAACTCTATCTGTGACTCTTCCATGAAATCTTTTACTCATGAAATCACAGATCCAAGGTTAAGACCTTCATTTGCGGAGATTATGGCTGCGTTAAAGCCGCTGCAGAAGCCAATGTCGAGTTCTCAAGTGCCGAGACCAAGTGGTCGTGATAAGGCTCGATTGTTGCAAGTTGCGGAAGACCCCTGCTATCTGCTTGTGATCATGGCTTCCTTTTTCGGATCAAATACATTTCTATCCCACCCACTTACCAGAACTTATCACTTGGCTTCCTCACAAACACCTTCACCTTCACCTTCACCTTCAACCCCACCTTCCCAACCGCCGCAAACTCCGTCGCCATCTCCATCTCTGAGCACTACTTCATCGGAGCCACCAAAACCAGCCCCAACAAAGGTGGAGCAACAGAGACCCACCACCAATGTCGAGTCCACGGATTGGATTGCTTCAACCTTGACAAGGCGATTCGGGCTCGGCGCAGGCCTTGGGTGGGCTGCTTTTCTCGCCTTTGGTGTAATCTCCGAACAGATCAAAACCCGCCTCGAAGTCTCTCAAGAAGTAGCAAATACAAGAAACGTTGAAAAGGAAGAGGAAGTAGTGCTACCCAATGGCATAAGGTATTACGAGCTGAGAGTTGGCGGCGGCGCCACACCGAGGTCCGGGGACTTGGTTGTGATAAACCTCAAGGGAAAGATACAAGGCAGTGATGAAGTATTTGTAGATACCTTTGAAAGTGGTAGAAAGCCACTGGCTTTGGTGATGGGCTCAAGACCTTACAGCAGAGGAATGTGTGAAGGTTTGGAATATGTGGTGAAATCCATGAAAGCAGGTGGTAAGAGGAGAGTTATAATTCCTTCTAATTTGGGGTTTGGAGAGAAAGGTGGAGATTTGGGTTCTGGTCTTCAAATTCCTCCATTTGCAACTTTAGAGTATGTTGTTGAGATTGACAAGGTGTCCATTGCTCCTGCTTGA 4059 46.05 MKNLLKKFHIMSSGQSDDASEGSTSSRGSKLIESSSSDKLLSRSRPTHFSSEHKPLSGLSGWLNSVTNRRSPSPPSSSNPTAGEIMEPSDSVSSRDAALDTSRHDSGSSNSRDPDIEEEYQIQLALEMSAREDPEAAQIEAVKQISLGSCDPDNTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFTESTSEKMPSLVDLQGAPMSGSVTWEAVLINKAADANLLKLEQTALEMAIKMGSESPISVNSYLVRKLAVLVSDHMGGPVGDPEKMLIKWRNLSYSLKATLGSMVLPLGSLTVGLARHRALLFKSEVVVDKLKPYLSSKALGIVGLTNMGKKMSLLANAMVKDSPNGVGIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGALIPADVAGSHVEYDGSPFSASPLSRDVDSSQAASSSSGVGSSLEENPYFGISDRKPKSGTLSATKEYDPPNVNKAPSRDFASKPNYPGMHIRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTEAYPDQIDVIVESKSPTEDKDQSRKVPGLCESVDKKDPRPTNFLPPLPQPRQHSKASPTHGQQLHHKPLELNLSLDSRESSGQPIALPFEVTPVKYGRNVPVAAAAAAAAAVVASSMVVAAAKNTDANLEIPVAAAATATAAAVVATTAAVNKQYEQVEADAALYEQRGSGDREHEACGENSEGERISDKSVGNESTKSDITLDDVAECEIPWEEISLGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGETLEEFKSEIAKFVIIFSILCRDFHLKVRIMKRLRHPNVVLFMGAVTRAPHLSIVTEFLPRGSLYRLLHRPNNQLDERKRMRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDKNWVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLDIPDNMDPAIADIIRKCWQTLKSHASNGIAELDPINSICDSSMKSFTHEITDPRLRPSFAEIMAALKPLQKPMSSSQVPRPSGRDKARLLQVAEDPCYLLVIMASFFGSNTFLSHPLTRTYHLASSQTPSPSPSPSTPPSQPPQTPSPSPSLSTTSSEPPKPAPTKVEQQRPTTNVESTDWIASTLTRRFGLGAGLGWAAFLAFGVISEQIKTRLEVSQEVANTRNVEKEEEVVLPNGIRYYELRVGGGATPRSGDLVVINLKGKIQGSDEVFVDTFESGRKPLALVMGSRPYSRGMCEGLEYVVKSMKAGGKRRVIIPSNLGFGEKGGDLGSGLQIPPFATLEYVVEIDKVSIAPA 1352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8690749 8703269 - CmoCh13G010320.1 Cmo13g01032 395087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 558 607 - -
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 558 582 - -
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 9 44 - -
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 51 88 - -
Cmo13g01032 1352 Pfam Ethylene-responsive protein kinase Le-CTR1 354 398 - -
Cmo13g01032 1352 Pfam Ethylene-responsive protein kinase Le-CTR1 157 311 - -
Cmo13g01032 1352 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 319 - -
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 97 116 - -
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 418 439 - -
Cmo13g01032 1352 SMART serkin_6 760 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01032 1352 Gene3D - 1202 1350 IPR046357 GO:0003755
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 711 737 - -
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 711 742 - -
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 1153 1174 - -
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 1118 1174 - -
Cmo13g01032 1352 CDD STKc_MAP3K-like 766 1061 - -
Cmo13g01032 1352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Cmo13g01032 1352 ProSiteProfiles Protein kinase domain profile. 760 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01032 1352 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 319 - -
Cmo13g01032 1352 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1250 1348 IPR001179 GO:0003755
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 1 116 - -
Cmo13g01032 1352 Gene3D Transferase(Phosphotransferase) domain 1 857 1073 - -
Cmo13g01032 1352 ProSitePatterns Protein kinases ATP-binding region signature. 766 787 IPR017441 GO:0005524
Cmo13g01032 1352 Coils Coil 692 712 - -
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 416 484 - -
Cmo13g01032 1352 MobiDBLite consensus disorder prediction 1126 1152 - -
Cmo13g01032 1352 SUPERFAMILY FKBP-like 1177 1347 - -
Cmo13g01032 1352 SUPERFAMILY Protein kinase-like (PK-like) 742 1014 IPR011009 -
Cmo13g01032 1352 Pfam Protein tyrosine and serine/threonine kinase 761 1016 IPR001245 GO:0004672|GO:0006468
Cmo13g01032 1352 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1045 1091 - -
Cmo13g01032 1352 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 353 1015 - -
Cmo13g01032 1352 Gene3D Phosphorylase Kinase; domain 1 753 855 - -
Cmo13g01032 1352 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 353 1015 - -
Cmo13g01032 1352 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1246 1344 IPR001179 GO:0003755
Cmo13g01032 1352 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1045 1091 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g01032 Cmo18g00050 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00051 Cmo-Chr18:333438 Cmo13g01032 Cmo-Chr13:8690749 3.31E-99 transposed
Cmo13g01032 Cmo-Chr13:8690749 Cmo18g00050 Cmo-Chr18:323440 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74800 PF07714 PK_Tyr_Ser-Thr 5.30E-52 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01032 - - csv:101209024 1757.65