Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01034 ATGAAAGAAGTTTTGAAAAAATGGCGGGTTGGAGGTTGGAGCCTCTTCCAATGGTGGGATCGAGAGAGAGAGAGACGAAAAACGTTTGTGGCGCTTATAATTGGCCACCGAGAAAATCGCGAAAGAGGGAGAACGGAAAATGCTGGAATTCAGTGGCGGAGAGCTGAATCAGAACCGAGGAAGGCGACCGCTGGTTTTCCACTTACAAGCCAAGATTCCTTAATTCAAAGTTCTTATAATGATGATAAGCAATCAGACTTTTTCACAGAGTATGGCGAAGCAAGCCGATACCAAATTCAAGAAGTTGTTGGGAAAGGAAGCTACGGAGTTGTTGGTTCTGCAATTGATAGCCAGACGGGTGAGAGAGTTGCCATCAAGAAAATTAATGATGTTTTTGAGCATGTATCTGATGCCATACGCATCCTCAGAGAAATTAAGCTTCTTCGGATGCTTCATCATCCGAATATTGTAGAGATAAAACATATTATGCTTCCTCCATCACAACGAGAATTCAAAGATATATATCTCGTTTTTGAGTTGATGAAGTCTGATCTTCACCATGTAATTAAGGCAAATAATGATCTTTCTCCCAAGCAGCATAAATACTTTTTGTACCAGCTTCTTAGTGGCCTAAAATATATACATGCAGCAAATGTCCTTCATCGAGATTTGAAGCCGAAAAACATACTTGCTAATGCTGACTGCAAATTGAAGATATGTGATTTTGGACTTGCTCGTGTATCTTTTAGTGATGCGCCATCTACTATTTTCTGGACAGATTATGTTGCAACTCGTTGGTATCGTGCTCCCGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCTATAGATATATGGAGTATCGGATGTATATTTGCAGAAATTCTTACGGGAAAGCCCTTGTTTCCTGGAAAAAATGTGGTGCACCAATTAGATCTAATTACCGATCTGTTTGGCACTCCTGAAGCTGAGGCCATAGCGAAGATTCGAAATGAGAAGGCAAGGAGGTATCTAGGAAACATGCGTAAAAAACCACCAGTTCCATTCTCACGGAAGTTTCCCAATGTTGACCCATCGGCACTTCGTTTACTGGAACGTCTTCTGGCATTTGATCCCAAATGCCGTCCAACAGCTGCAGAGGCACTTTCTGATCCTTACTTCAATGGTATTGCGAAAACGGAACTTGAACCTTCTATTCAACCAATTTCAAAAATAGAGTTCGAGTTTGAGAGGAGGAGATTATCAAAAGATGACATTAGAGAGTTAATTTATGAAGAGATTTTAGAGTATCATCCCCAAATGCGTGAGGAGTGTCTACACCCTGAAGATCAAACTACCTTTTTGTATCCAAGGCTTCAGTTTGCGCATCTGGAAGAGCACCATGTTAATGGTGAAAGAAGACTTCCACTTCAAAGGCAGAACATTTCTTTACCTCGCGAGCGGGTTAGTCCAACTGAGAACAACAACGATGCACATGACATTGATTTTCAAAGGGGGGAAGACAAGAGTGCTCATCTCTTCAAAAGTGCTAGCATTAGTGCATCGAGGTGTGTTGGGGTATTACCAAAGGAAAAGTCTGAGGCGGAAGAAACGAGTTCTGAAGTGAAAAATGGAGTGGATGGGCTGTCTCAAAAGATTGCAGTCCTTCAGACTTAA 1659 41.65 MKEVLKKWRVGGWSLFQWWDRERERRKTFVALIIGHRENRERGRTENAGIQWRRAESEPRKATAGFPLTSQDSLIQSSYNDDKQSDFFTEYGEASRYQIQEVVGKGSYGVVGSAIDSQTGERVAIKKINDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKSDLHHVIKANNDLSPKQHKYFLYQLLSGLKYIHAANVLHRDLKPKNILANADCKLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEILTGKPLFPGKNVVHQLDLITDLFGTPEAEAIAKIRNEKARRYLGNMRKKPPVPFSRKFPNVDPSALRLLERLLAFDPKCRPTAAEALSDPYFNGIAKTELEPSIQPISKIEFEFERRRLSKDDIRELIYEEILEYHPQMREECLHPEDQTTFLYPRLQFAHLEEHHVNGERRLPLQRQNISLPRERVSPTENNNDAHDIDFQRGEDKSAHLFKSASISASRCVGVLPKEKSEAEETSSEVKNGVDGLSQKIAVLQT 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8708506 8712786 + CmoCh13G010340.1 Cmo13g01034 395089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01034 552 ProSiteProfiles Protein kinase domain profile. 97 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01034 552 MobiDBLite consensus disorder prediction 44 64 - -
Cmo13g01034 552 Gene3D Phosphorylase Kinase; domain 1 113 434 - -
Cmo13g01034 552 SMART serkin_6 97 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01034 552 CDD STKc_TDY_MAPK 96 433 - -
Cmo13g01034 552 MobiDBLite consensus disorder prediction 44 60 - -
Cmo13g01034 552 ProSitePatterns MAP kinase signature. 132 235 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo13g01034 552 Pfam Protein kinase domain 97 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01034 552 Gene3D Transferase(Phosphotransferase) domain 1 183 411 - -
Cmo13g01034 552 ProSitePatterns Protein kinases ATP-binding region signature. 103 127 IPR017441 GO:0005524
Cmo13g01034 552 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 63 451 - -
Cmo13g01034 552 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 63 451 - -
Cmo13g01034 552 SUPERFAMILY Protein kinase-like (PK-like) 93 393 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00349 Cmo13g01034 CCT
Cmo11g00311 Cmo13g01034 CCT
Cmo10g00349 Cmo13g01034 ECH
Cmo11g00311 Cmo13g01034 ECH
Cmo13g01034 Cmo18g00049 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01034 Cmo-Chr13:8708506 Cmo17g00265 Cmo-Chr17:1582906 0 dispersed
Cmo10g00349 Cmo-Chr10:1579520 Cmo13g01034 Cmo-Chr13:8708506 0 wgd
Cmo11g00311 Cmo-Chr11:1499676 Cmo13g01034 Cmo-Chr13:8708506 0 wgd
Cmo13g01034 Cmo-Chr13:8708506 Cmo18g00049 Cmo-Chr18:316757 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74801 PF00069 Pkinase 7.90E-68 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01034 - - bhj:120082540 837.795