Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01036 ATGGGCATTAAAGATCTCCTCAGATTCATGAAGCCCTACATTGAGCCCATTCACATCAAGAAATACGCGGGCAAACGTGTGGGTATCGATGCCTATTCGTGGCTGCACAAGGGAGCTTATTCGTGTAGTATGGAGATTTGCCTCAACTCTGATAGTGATAAGAAATGGCGATACTTAGACTACTGTATGCATAGAATCAATTTGCTTCGCCATTACAAGATAGTCCCAGTTGTTGTTTTTGATGGTGGGAATGTTCCATGTAAGAAAGCCACTGAGCAACAGAGGCACAGAAGAAGAGAGACAAACAGGGAATTAGCGATGGAGAAGTTGAAAGAAGGGAATGTTGGTGCTGCCTCTGAGCTTTTCCAGCTTCTTAGAGAACACAACATCGAATTTGTGGTTGCCCCTTATGAGGCCGATGCACAGTTGGCATATCTTTCCAGCCTCGGAACACAAAACGGAGGAATTGCGGCTGTGATTACAGAAGATAGTGACCTGATTGCATATGGTTGTAAAGCTACAATATTTAAGATGGATCGATACGGCAATGGGGAAGAGATGATTCTAGATAAGATTTTTGACTCGGCAGGCTGCACACCTTCCTTCAGATATTTTGATAAGGAATTGCTCACGGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCTTCTGTTCCTGGAATTGGCATTGCAAAGGCTTATGCCTTGGTCTCCAAGTATCGGAATTTGGAACGTGTTCTTTCTGTTTTGAAGCTTGAGAAACCGAAGAAAATGCCTGAAGATTACTTCAAACTTTTCAGGGAAGCTATGGCAGTTTTTCAGCATGCACAAATATATGATGCTGAGACGAGAAAGCTTAAACATATGAAACCGCTTCCTCTAGAGCTTCTGCAGTTCCTAGACGAAGAAATTGATTTCTTGGGACCAGATATGCCTCCTTCAATAGCTGCTTCAATAGCCGAAGGAAGGTTAAACCCCATAACAATGGAGGCCTTTGACTATCTCCCAAGTGAAGAACGTCGCCAAGACCTTGTACAAATCAAAAACAACGAAAGACTTCCAAGGTTCGAGGCAGCTGAGGCATCTGCGAACGATAGCTGTTTTATGGTCTTCGTCTGTAAGGACAAAGAAAGACATATCCCGGATAAGAGAATTAAACCCCTAGTAGATGGCCGTAATTCTAAAGGAGAATTAGCACTTGAGAAGCTAAGCACACCGTTGAAAGTTCAAACAACAAATGAAGACAAAAACGTTCTTGCTTACAAATCATTAAAGATTCCTGACAACAATCCATTCAAGAGAAGGAAAGGCGATGAACTGCACATGGATCTAGCGCAGAGTGTTGACGAAGAAGTTTTAGTCATAAGTGAGGATGAGTGTGAGGAACCATCATGTGGGTCTCTAGATAATTTACTAAAATCTTCCAAGAAAAGAAAAATGAACAAAGCTCTCCCTGACCAAATGGATAATGTTTCTGAGCCTTTGTCGGGGTTGACCCAAGAAGAGGATTTGGTGCTGTTAGAACTGACACCAGAATCCCAAAAGAGCGTAAGCTCAAACTCGAGCAGTGTCATTGGTAGAAAAAGAGTTGTAGGCAAGGAGAACAAGAGAAAAAGTAGCTGTAATAGTTCAATAACTCCAAAGAACAGTATATTGAACTTTTTCCGTAGAGTATGA 1677 42.1 MGIKDLLRFMKPYIEPIHIKKYAGKRVGIDAYSWLHKGAYSCSMEICLNSDSDKKWRYLDYCMHRINLLRHYKIVPVVVFDGGNVPCKKATEQQRHRRRETNRELAMEKLKEGNVGAASELFQLLREHNIEFVVAPYEADAQLAYLSSLGTQNGGIAAVITEDSDLIAYGCKATIFKMDRYGNGEEMILDKIFDSAGCTPSFRYFDKELLTGMCVLAGCDFLPSVPGIGIAKAYALVSKYRNLERVLSVLKLEKPKKMPEDYFKLFREAMAVFQHAQIYDAETRKLKHMKPLPLELLQFLDEEIDFLGPDMPPSIAASIAEGRLNPITMEAFDYLPSEERRQDLVQIKNNERLPRFEAAEASANDSCFMVFVCKDKERHIPDKRIKPLVDGRNSKGELALEKLSTPLKVQTTNEDKNVLAYKSLKIPDNNPFKRRKGDELHMDLAQSVDEEVLVISEDECEEPSCGSLDNLLKSSKKRKMNKALPDQMDNVSEPLSGLTQEEDLVLLELTPESQKSVSSNSSSVIGRKRVVGKENKRKSSCNSSITPKNSILNFFRRV 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8717250 8721081 - CmoCh13G010360.1 Cmo13g01036 395091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01036 558 Pfam XPG N-terminal domain 1 101 IPR006085 GO:0004518
Cmo13g01036 558 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 206 338 IPR036279 -
Cmo13g01036 558 SMART HhH_4 207 240 IPR008918 GO:0003677|GO:0003824
Cmo13g01036 558 Gene3D - 1 196 - -
Cmo13g01036 558 Pfam XPG I-region 129 220 IPR006086 GO:0004518
Cmo13g01036 558 ProSitePatterns XPG protein signature 2. 129 143 IPR019974 GO:0016788
Cmo13g01036 558 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 210 225 IPR006084 -
Cmo13g01036 558 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Cmo13g01036 558 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 125 142 IPR006084 -
Cmo13g01036 558 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Cmo13g01036 558 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 553 - -
Cmo13g01036 558 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 553 IPR006084 -
Cmo13g01036 558 SUPERFAMILY PIN domain-like 2 220 IPR029060 -
Cmo13g01036 558 MobiDBLite consensus disorder prediction 516 544 - -
Cmo13g01036 558 CDD PIN_EXO1 1 194 IPR044752 GO:0046872
Cmo13g01036 558 CDD H3TH_FEN1-like 208 280 - -
Cmo13g01036 558 SMART xpgineu 126 198 IPR006086 GO:0004518
Cmo13g01036 558 Gene3D - 203 276 - -
Cmo13g01036 558 SMART xpgn3 1 102 IPR006085 GO:0004518
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01036 K10746 EXO1; exonuclease 1 [EC:3.1.-.-] - csv:101208542 852.818
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01036 Cmo-Chr13:8717250 Cmo18g00421 Cmo-Chr18:2768894 5.28E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g234 . . . . . . . . Cmo13g01036 . . . . . . Cpe20g00142 . . . . . . . . . . . . . . . Cone2ag0752 . . . Lsi02g00221 Csa01g00703 Chy12g01409 Cme12g01843 . . . . . Bpe15g00519 . . Sed01g1757 . . Cma13g01000 . Car13g00834 . . . Bhi08g01277 Tan05g2208 Cmetu12g1384 Lac10g0276 . . . Cla04g01060 Cam04g1103 Cec01g1617 Cco01g1663 Clacu04g1127 Cmu04g1111 Cre01g1413 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011036 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g01036 Cmo_Chr13 FPKM 8.0 9.231977 9.848923 10.956958 20.732859 27.047718 17.588053 10.882241 11.345163 11.378468