Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01053 ATGACACCTTCCCTCCCTCTCTTCCTCTTCTTCTTCTTCACAATCGTGTGGTATGATCTTCCGCTATGTTTCGGCGACGGCACAGTCGATGAATTTAAAGCTTGCGATGTCTATTACAACTGCGGAGATTTTGTAAACATCACGTATCCGTTCTGGGGGAATGAACGGCCGGTATTTTGCGGGCGGCGAGAATTCGAGCTCAATTGCAAAGACAACAGAACCACCACGATGGAAATCAGCTCTATAGAGTTTCACGTTCTCAACATCAGCCGATCCAAACATACAATGACAATCGCAAGATCGGATCTCCGAACTGATTACTGCCCTAAAATCGAAACCAAAACGACGACGATTGATTATCGTCTCTTCAAGTATACTTTGAACGATCTGAATCTCTCTGTCTGGTACGATTGCCCGCTGCAACCTGGAATTCTCGACAATTACAGATTCACGTGCGGATCGGAGGGGGAAATACGAGGGAGAGCGAATTACGCTTTCGAAACGGAAGCGCTGAATCGGAGTAGAAACATGAGCGAGTGTAGACTGAACATCGAAGTGACAATTACAAAAGAGGTATTCGAAGAAACACACAAGAACAGAACGATGGCGGTGGAGCAGGGTGTGAAAAGAGGGTTTGATGTGGAATACGGGGATTTCTACACGGTGGCGTGCGAGGGGTGCAAAGTATACGGCGGCAAGTGTGGAGGGAACGCCACCCATGAGTTTTACTGCATTTGTAGCGATGGAGACATCCATCCTTACGTTTGCAAGTCTCCTCCTCCTCCTGGTACATTGGGAGAGTTTGAGGGGAGGGAGAAAGTTGATCTAGATCAATCAGATACTGGACCGAAAGACATAATAGGTGCAACTACCATCATTGTCTATATTATTATCATCATCTCCATCTACTACAAGAGAAGAAGCATCTCAAACAACGACAAAATTGAGGAAATTATAAGGAACTATTCCACGCAAACACCCAAGCGATATACTTACTCAAAGCTGAAGAAAATCACAGGCTCTTTCAACAACAAGATTGGCCAAGGAGGGTTTAGCTCTGTCTACAAAGGAAAGCTACCCGACGGCCGCGATGTGGCTGTGAAGCTTTTGAATGAATCCAAATCAAATGGCGAAGAATTTATGAACGAAGTTGTTAGCTTCGCCAAAACTTCCCATGTAAATATAGCCACACTCTTAGGTTTCTGCTACGAGAGGAACAAAAGAGCTTTGATTTATGATTATATGGCTAAAGGGTCCCTAGATAAGTACATTTCCAGCAACAGGATTCAAGAAAAGGGCGAGAAGTTGGATTGGAACACACTCTACAATATTGTCATCGGCGTGGCACGAGGCTTGGAGTACTTGCACCGTGGCTGCAACACAAGGATCTTGCACTTCGACATCAAGCCACACAACATACTCTTGGATGATGATTTCTGCCCCAAAATCACTGATTTCGGGCTGGCCAAGCAATGCAGGGCCAAGGAGAGTCATGTGTCGATGACATGTGTAAAGGGGACAATAGGGTTCATAGCGCCAGAGATAATATTTAGGAATCTTGGCAAAGTTTCTCATAAGTCTGATGTTTATAGTTATGGGATGTTGGTTCTTGAGATGGTGGGTGAGAGAAAGAGTCCCAATCAAGGAGTGGAGCAGAGCAGCGATGAGTACTTTCCTGATTGGATATATAAGGATCTTACACAAAGTGAAATTCATGGGGGCTGTTGGTGGGGAAACACAGAGGAAGAAGAAGAAATGGCAAGAAAAATGATCATTGTGGGGTTGTGTTGTATTCAGACATTGCCCGGCGACAGACCGTCGATGACCGATGCGGTTTCGATGTTGGAAGGCAGTGTTGATGGCTTACAAATTCCACCAAAACCTGACTTGTTCGGACCTCCTGCCGCTGATCTACTCCAAGTTGCTGCTTCTTCTTCTTCGACCTCGTACTAA 1953 45.37 MTPSLPLFLFFFFTIVWYDLPLCFGDGTVDEFKACDVYYNCGDFVNITYPFWGNERPVFCGRREFELNCKDNRTTTMEISSIEFHVLNISRSKHTMTIARSDLRTDYCPKIETKTTTIDYRLFKYTLNDLNLSVWYDCPLQPGILDNYRFTCGSEGEIRGRANYAFETEALNRSRNMSECRLNIEVTITKEVFEETHKNRTMAVEQGVKRGFDVEYGDFYTVACEGCKVYGGKCGGNATHEFYCICSDGDIHPYVCKSPPPPGTLGEFEGREKVDLDQSDTGPKDIIGATTIIVYIIIIISIYYKRRSISNNDKIEEIIRNYSTQTPKRYTYSKLKKITGSFNNKIGQGGFSSVYKGKLPDGRDVAVKLLNESKSNGEEFMNEVVSFAKTSHVNIATLLGFCYERNKRALIYDYMAKGSLDKYISSNRIQEKGEKLDWNTLYNIVIGVARGLEYLHRGCNTRILHFDIKPHNILLDDDFCPKITDFGLAKQCRAKESHVSMTCVKGTIGFIAPEIIFRNLGKVSHKSDVYSYGMLVLEMVGERKSPNQGVEQSSDEYFPDWIYKDLTQSEIHGGCWWGNTEEEEEMARKMIIVGLCCIQTLPGDRPSMTDAVSMLEGSVDGLQIPPKPDLFGPPAADLLQVAASSSSTSY 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8787253 8791319 + CmoCh13G010530.1 Cmo13g01053 395108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01053 650 Pfam Wall-associated receptor kinase C-terminal 152 249 IPR032872 -
Cmo13g01053 650 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Cmo13g01053 650 ProSiteProfiles Protein kinase domain profile. 340 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01053 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Cmo13g01053 650 SUPERFAMILY Protein kinase-like (PK-like) 316 616 IPR011009 -
Cmo13g01053 650 Pfam Protein kinase domain 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01053 650 Pfam Wall-associated receptor kinase galacturonan-binding 35 100 IPR025287 GO:0030247
Cmo13g01053 650 Gene3D Phosphorylase Kinase; domain 1 312 414 - -
Cmo13g01053 650 PANTHER - 30 638 - -
Cmo13g01053 650 PANTHER RUST RESISTANCE KINASE LR10-RELATED 30 638 IPR045874 GO:0004672
Cmo13g01053 650 SMART serkin_6 340 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01053 650 Gene3D Transferase(Phosphotransferase) domain 1 415 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01051 Cmo-Chr13:8779611 Cmo13g01053 Cmo-Chr13:8787253 3.37E-174 dispersed
Cmo13g01053 Cmo-Chr13:8787253 Cmo15g00931 Cmo-Chr15:4764971 1.99E-72 dispersed
Cmo13g01053 Cmo-Chr13:8787253 Cmo13g01054 Cmo-Chr13:8791875 1.26E-74 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74803 PF00069 Pkinase 1.40E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01053 - - cmax:111495731 1183.7