Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01055 ATGACAGGTGCTGGCTCTGGTATTGGAGGCATTGTGATGATGAGTATAATCTTTTTCATCAGGCTTCGTATGCACAAAAAGAAGCATCAAAACTATTCTTGTGATCGTCCGATGAAGGAGCTTGAGAAAATAGAACATTACATGGCTCTATCTCTTTTCTCTTATCACGAACTTGTAAAAGCTACAGACAAATTCAACCCAGCAAACGAACTTGGAGATGGTGGCTTTGGCACTGTCTACTATGGCAAACTCCGAGATGGGCGTGAGGTCGCTGTTAAACGATTGTTTGAAAATAACTATAGAAAAGTTGAGCAATTCATGAATGAAGTTGAGATGCTCACTCGTTTGCGCCACCCACATCTCGTCACCCTTTATGGATGCACATCTCGACGCTCCCGTGAGCTCTTGTTGGTGTATGAGTTCATTCCGAATGGTACTGTGGCCGATCATCTTCATGGCAACCGAGCAAGATCAGGTGAGCTTCCATGGCTTACAAGGTTGAATGTTGCCATAGAGACTGCAAGTGCTCTGTCTTTTCTCCATGCTTCTGAGACTATCCACCGTGATGTTAAAACCACCAACATTCTCCTTGACAACAATTTCGGTGTTAAAGTCGCTGATTTCGGACTATGTCGCCTTTTTCCTACACAAGCCAGCCATGTTTCAACTGCACCACAAGGCACTCCTGGCTATATTGATCCAGAGTATTATGAGTCTTATCAACTTACGAACAAAAGCGACGTGTTTAGCTTTGGAGTCGTGTTGGTTGAGCTGATATCTTCAAAGCCTGCAGTTGATATCACTAGGCATAGGCATGAGATTAACCTGTCAACAATGGCTATCAATAAGATCCAGAACGACGAATTACATGACTTCGTAGACCCATCTCTCGGATTTAAAACAGATCAAAGAATACGAAATATGATATGCGGAGTTGCCGAGTTAGCATTTCAATGCCTGCAAAGTGCGAGGGATACAAGGCCGTCAATGATGGAAGCTCTAGAAATTCTAAGGAATATAGAGAATCGAAGTTGTGGCACTGGGAAAGCGCCATTAGTGCCAGAATCCCCAGACTCCGTCACTGTGCTTTGGATTAGCAAAACTTCCACACCAAACGACCCAAATCACTTATTCACAACTGATCAATTATCTGCTTCTGTTGTAAGCTCTGTTTCGTACGATGAGAACGGCTCTGTTTTGTACGATGAGAAATGCTCTGTTTTGCACGATGAGAAATGCTCTGTTTTGCACGATGAGAAATGCTCTGTTTTGCACGATGAGAAATGCTCTGTTTTGCACGATGAGCACAGCTCTGTTTTGTACGATGAGAGTTACAAATTCTTATGCGATTGGGAAGGGGAAAAGTTTACCTTCAACACCACTTCCTGCAAACGATCGGCCGTCGGTGACAGAGGTGGTGGCTATGTCAGAAGGGAGCGTATATGGGGGAAAGCTGAAGGAAATTGCAAAAACAAGGGATGTAGCAGTATGAATGACGATGGTCAATATTTGCGGAAAGCGGCGGGTCGGAAGTGA 1536 44.01 MTGAGSGIGGIVMMSIIFFIRLRMHKKKHQNYSCDRPMKELEKIEHYMALSLFSYHELVKATDKFNPANELGDGGFGTVYYGKLRDGREVAVKRLFENNYRKVEQFMNEVEMLTRLRHPHLVTLYGCTSRRSRELLLVYEFIPNGTVADHLHGNRARSGELPWLTRLNVAIETASALSFLHASETIHRDVKTTNILLDNNFGVKVADFGLCRLFPTQASHVSTAPQGTPGYIDPEYYESYQLTNKSDVFSFGVVLVELISSKPAVDITRHRHEINLSTMAINKIQNDELHDFVDPSLGFKTDQRIRNMICGVAELAFQCLQSARDTRPSMMEALEILRNIENRSCGTGKAPLVPESPDSVTVLWISKTSTPNDPNHLFTTDQLSASVVSSVSYDENGSVLYDEKCSVLHDEKCSVLHDEKCSVLHDEKCSVLHDEHSSVLYDESYKFLCDWEGEKFTFNTTSCKRSAVGDRGGGYVRRERIWGKAEGNCKNKGCSSMNDDGQYLRKAAGRK 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8793129 8794857 + CmoCh13G010550.1 Cmo13g01055 395110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01055 511 Pfam Protein tyrosine and serine/threonine kinase 69 335 IPR001245 GO:0004672|GO:0006468
Cmo13g01055 511 SMART serkin_6 65 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01055 511 SUPERFAMILY Protein kinase-like (PK-like) 49 368 IPR011009 -
Cmo13g01055 511 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 2 373 - -
Cmo13g01055 511 ProSiteProfiles Protein kinase domain profile. 65 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01055 511 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 2 373 IPR044652 -
Cmo13g01055 511 ProSitePatterns Protein kinases ATP-binding region signature. 71 93 IPR017441 GO:0005524
Cmo13g01055 511 Gene3D Transferase(Phosphotransferase) domain 1 142 346 - -
Cmo13g01055 511 Gene3D Phosphorylase Kinase; domain 1 35 141 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00288 Cmo13g01055 CCT
Cmo10g00329 Cmo13g01055 CCT
Cmo10g00329 Cmo13g01055 ECH
Cmo11g00288 Cmo13g01055 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01055 Cmo-Chr13:8793129 Cmo14g01200 Cmo-Chr14:10170525 1.82E-143 dispersed
Cmo13g01052 Cmo-Chr13:8782180 Cmo13g01055 Cmo-Chr13:8793129 0 proximal
Cmo13g01055 Cmo-Chr13:8793129 Cmo18g01013 Cmo-Chr18:10980597 1.40E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74804 PF07714 PK_Tyr_Ser-Thr 7.70E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01055 - - cmax:111495731 577.785