Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01062 ATGCTTTCGATGGGCCTTTTGTCTTCTATTTGCGCCTGCTTGAAGAAGCTCAAAGCAGCTAATTCAGCGAGTGCCGATGAAGCGGATGATGAAGATGTATCCACTGACATCTTCTTTGAACTCAGTGCTTTGCAAATTGCGACTAATTTCTTTTCTGAGGTGAATAAGCTCGGCCATGGAGGTTTTGGACCGGTGTACAAGGGTTTCGGAGCAGCTCCATGTCAATTGGCAATAGGGTTGATGCCAAATGGCCAACAAGTAGCAATCAAGAAACTATCGGTAGATTCTAGGCAAGGAGTGAGGCAATTTAGTAATGAAGTGAAACTTTTACTGCGAATTCAGCACCGAAATTTGGTCATTTTATTGGGCTGCTGTGTAGAAGGGCCTGAAAAGATGCTTGTATATGAGTTTCTGCCAAACAGAAGCCTCGATTATTTTATTTTTGATAAAAAGAGGTCTCCATTCCTGGATTGGACAACACGGTTCCATATAATTACAGGTATCGTGAGAGGTCTTCTCTATTTACATGAAGAGGCTCCTGCAAGAATTATACATAGAGATATCAAAGCCAGTAACGTATTATTAGATGAGAAGTTGAATCCGAAAATCTCTGATTTTGGATTAGCCCGGCTTTTTCCTGGGGATGATACACATTTGAATACATTTAAGATCGCTGGCACTTATGGCTATATGGCTCCTGAATATGCAATTCATGGATACTTATCTGTGAAGAGTGACGTTTTCAGTTTTGGAATCTTGGTATTGGAGATTGTTAGTGGAAGAAAAAATCACGATGATCGGCTTGGTGCTCAACAGGCGGACCTATTGGGATATGCATGGTCGCTTTACCAAGATGGGAAGATTTTGGAATTAGCTGATGAGAGCCTAACAAAATGCAATGCAGATGAGGCAGCTATGTGCGTTCAGTTGGGTTTGCTATGTTGTCAAGCGAGTGTTTCAGATAGGCCTGATATGAACACCATTCATCTCATGCTTTCCAGTGATTCATTCACGTTGCCGCGCCCCGGGAAACCTGGACTTCATGGTCGAGCAGCACCTCGGACAACTACCTCTACTTCTGCATTCACCAAGACAAATACTACCAGTACTCAAACTGGCGTCACCAGAGCTTCTGCGAGTAGTAGTTTGGTAGAGGATTATTCAAGAAACTCCATGTCCATTTCTTCAATTGATGAAGGCAGGTGA 1206 42.79 MLSMGLLSSICACLKKLKAANSASADEADDEDVSTDIFFELSALQIATNFFSEVNKLGHGGFGPVYKGFGAAPCQLAIGLMPNGQQVAIKKLSVDSRQGVRQFSNEVKLLLRIQHRNLVILLGCCVEGPEKMLVYEFLPNRSLDYFIFDKKRSPFLDWTTRFHIITGIVRGLLYLHEEAPARIIHRDIKASNVLLDEKLNPKISDFGLARLFPGDDTHLNTFKIAGTYGYMAPEYAIHGYLSVKSDVFSFGILVLEIVSGRKNHDDRLGAQQADLLGYAWSLYQDGKILELADESLTKCNADEAAMCVQLGLLCCQASVSDRPDMNTIHLMLSSDSFTLPRPGKPGLHGRAAPRTTTSTSAFTKTNTTSTQTGVTRASASSSLVEDYSRNSMSISSIDEGR 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8829435 8832207 + CmoCh13G010620.1 Cmo13g01062 395117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01062 401 Gene3D Phosphorylase Kinase; domain 1 12 137 - -
Cmo13g01062 401 Pfam Protein tyrosine and serine/threonine kinase 54 330 IPR001245 GO:0004672|GO:0006468
Cmo13g01062 401 MobiDBLite consensus disorder prediction 352 382 - -
Cmo13g01062 401 Gene3D Transferase(Phosphotransferase) domain 1 138 338 - -
Cmo13g01062 401 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 399 - -
Cmo13g01062 401 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 399 - -
Cmo13g01062 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Cmo13g01062 401 ProSiteProfiles Protein kinase domain profile. 51 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01062 401 CDD STKc_IRAK 57 332 - -
Cmo13g01062 401 MobiDBLite consensus disorder prediction 339 382 - -
Cmo13g01062 401 SMART serkin_6 51 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01062 401 SUPERFAMILY Protein kinase-like (PK-like) 39 350 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00324 Cmo13g01062 CCT
Cmo10g00324 Cmo13g01062 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01062 Cmo-Chr13:8829435 Cmo19g00979 Cmo-Chr19:8813769 8.87E-113 dispersed
Cmo13g01062 Cmo-Chr13:8829435 Cmo09g00901 Cmo-Chr9:4698818 2.16E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74805 PF07714 PK_Tyr_Ser-Thr 1.00E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01062 - - csv:101214463 648.277