Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01064 ATGGCTGAGTTTACTGCAAACTTCCAGAGCTTAAAGCCTTCACCTTTTCCTCTAATGGACATGGATCCCAACCAAATTCCAAGTCTGAATTTTCTTGACAACATTCCTGTTCTGTTCAACGACAGTTTCTTTGGCAATCAAGCTGCTGTTCCTCCCAGATTCCCGGAAATTTGGGGAGAAAATTTCTGTCAAGCAAATCAGATCACTGCACCTGTCTTTGAGCCTACAAATCCATCTGGAAGTGACCTCCATGGAAGCAAGAAAAGAAGGCTTCAAAATGAGGCATCTGAGAGCAGCTCTGGCAACTCAACCCCTCAGACTAAAAATAACTCTGGAAAAGGAAAGCGGTCGAAAAAAGGCGACGAAAACGACGGTGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCCAAAAGAGGTCAAGCAACAGACAGTCACAGTATAGCAGAAAGGATAAGAAGAGGAAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGCTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACTCAGATACTGCCGATAGATTGAAGGGAAAGGAAATGAGGGAAGGAAATGGAGGATTATTGGTTGCATCAACTGAAGATGGTCCCTTTGACATGAGCTTTGGTTCTTATTCCACAACAATATGA 762 42.39 MAEFTANFQSLKPSPFPLMDMDPNQIPSLNFLDNIPVLFNDSFFGNQAAVPPRFPEIWGENFCQANQITAPVFEPTNPSGSDLHGSKKRRLQNEASESSSGNSTPQTKNNSGKGKRSKKGDENDGEKPREVVHVRAKRGQATDSHSIAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDSDTADRLKGKEMREGNGGLLVASTEDGPFDMSFGSYSTTI 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8842441 8844906 + CmoCh13G010640.1 Cmo13g01064 395119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01064 253 MobiDBLite consensus disorder prediction 71 148 - -
Cmo13g01064 253 SMART finulus 146 196 IPR011598 GO:0046983
Cmo13g01064 253 Pfam Helix-loop-helix DNA-binding domain 144 191 IPR011598 GO:0046983
Cmo13g01064 253 CDD bHLH_AtBPE_like 130 215 - -
Cmo13g01064 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 208 IPR036638 GO:0046983
Cmo13g01064 253 Gene3D - 137 208 IPR036638 GO:0046983
Cmo13g01064 253 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 227 IPR024097 GO:0006355
Cmo13g01064 253 MobiDBLite consensus disorder prediction 114 148 - -
Cmo13g01064 253 PANTHER TRANSCRIPTION FACTOR BEE 1 2 227 - -
Cmo13g01064 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 190 IPR011598 GO:0046983
Cmo13g01064 253 MobiDBLite consensus disorder prediction 95 111 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00282 Cmo13g01064 CCT
Cmo10g00243 Cmo13g01064 CCT
Cmo11g00282 Cmo13g01064 ECH
Cmo10g00243 Cmo13g01064 ECH
Cmo13g01064 Cmo18g00036 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00127 Cmo-Chr7:697827 Cmo13g01064 Cmo-Chr13:8842441 2.95E-06 dispersed
Cmo13g01064 Cmo-Chr13:8842441 Cmo14g00830 Cmo-Chr14:4294708 9.46E-45 dispersed
Cmo15g00954 Cmo-Chr15:4914492 Cmo13g01064 Cmo-Chr13:8842441 4.26E-53 transposed
Cmo10g00243 Cmo-Chr10:1081086 Cmo13g01064 Cmo-Chr13:8842441 1.52E-69 wgd
Cmo11g00282 Cmo-Chr11:1371030 Cmo13g01064 Cmo-Chr13:8842441 6.79E-73 wgd
Cmo13g01064 Cmo-Chr13:8842441 Cmo18g00036 Cmo-Chr18:213740 1.02E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10871 PF00010 HLH 2.50E-05 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01064 - - csv:101213736 393.275