Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g01064 | ATGGCTGAGTTTACTGCAAACTTCCAGAGCTTAAAGCCTTCACCTTTTCCTCTAATGGACATGGATCCCAACCAAATTCCAAGTCTGAATTTTCTTGACAACATTCCTGTTCTGTTCAACGACAGTTTCTTTGGCAATCAAGCTGCTGTTCCTCCCAGATTCCCGGAAATTTGGGGAGAAAATTTCTGTCAAGCAAATCAGATCACTGCACCTGTCTTTGAGCCTACAAATCCATCTGGAAGTGACCTCCATGGAAGCAAGAAAAGAAGGCTTCAAAATGAGGCATCTGAGAGCAGCTCTGGCAACTCAACCCCTCAGACTAAAAATAACTCTGGAAAAGGAAAGCGGTCGAAAAAAGGCGACGAAAACGACGGTGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCCAAAAGAGGTCAAGCAACAGACAGTCACAGTATAGCAGAAAGGATAAGAAGAGGAAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGCTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACTCAGATACTGCCGATAGATTGAAGGGAAAGGAAATGAGGGAAGGAAATGGAGGATTATTGGTTGCATCAACTGAAGATGGTCCCTTTGACATGAGCTTTGGTTCTTATTCCACAACAATATGA | 762 | 42.39 | MAEFTANFQSLKPSPFPLMDMDPNQIPSLNFLDNIPVLFNDSFFGNQAAVPPRFPEIWGENFCQANQITAPVFEPTNPSGSDLHGSKKRRLQNEASESSSGNSTPQTKNNSGKGKRSKKGDENDGEKPREVVHVRAKRGQATDSHSIAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDSDTADRLKGKEMREGNGGLLVASTEDGPFDMSFGSYSTTI | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 8842441 | 8844906 | + | CmoCh13G010640.1 | Cmo13g01064 | 395119 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g01064 | 253 | MobiDBLite | consensus disorder prediction | 71 | 148 | - | - | |
Cmo13g01064 | 253 | SMART | finulus | 146 | 196 | IPR011598 | GO:0046983 | |
Cmo13g01064 | 253 | Pfam | Helix-loop-helix DNA-binding domain | 144 | 191 | IPR011598 | GO:0046983 | |
Cmo13g01064 | 253 | CDD | bHLH_AtBPE_like | 130 | 215 | - | - | |
Cmo13g01064 | 253 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 138 | 208 | IPR036638 | GO:0046983 | |
Cmo13g01064 | 253 | Gene3D | - | 137 | 208 | IPR036638 | GO:0046983 | |
Cmo13g01064 | 253 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 2 | 227 | IPR024097 | GO:0006355 | |
Cmo13g01064 | 253 | MobiDBLite | consensus disorder prediction | 114 | 148 | - | - | |
Cmo13g01064 | 253 | PANTHER | TRANSCRIPTION FACTOR BEE 1 | 2 | 227 | - | - | |
Cmo13g01064 | 253 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 140 | 190 | IPR011598 | GO:0046983 | |
Cmo13g01064 | 253 | MobiDBLite | consensus disorder prediction | 95 | 111 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo11g00282 | Cmo13g01064 | CCT | |
Cmo10g00243 | Cmo13g01064 | CCT | |
Cmo11g00282 | Cmo13g01064 | ECH | |
Cmo10g00243 | Cmo13g01064 | ECH | |
Cmo13g01064 | Cmo18g00036 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00127 | Cmo-Chr7:697827 | Cmo13g01064 | Cmo-Chr13:8842441 | 2.95E-06 | dispersed | |
Cmo13g01064 | Cmo-Chr13:8842441 | Cmo14g00830 | Cmo-Chr14:4294708 | 9.46E-45 | dispersed | |
Cmo15g00954 | Cmo-Chr15:4914492 | Cmo13g01064 | Cmo-Chr13:8842441 | 4.26E-53 | transposed | |
Cmo10g00243 | Cmo-Chr10:1081086 | Cmo13g01064 | Cmo-Chr13:8842441 | 1.52E-69 | wgd | |
Cmo11g00282 | Cmo-Chr11:1371030 | Cmo13g01064 | Cmo-Chr13:8842441 | 6.79E-73 | wgd | |
Cmo13g01064 | Cmo-Chr13:8842441 | Cmo18g00036 | Cmo-Chr18:213740 | 1.02E-95 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10871 | PF00010 | HLH | 2.50E-05 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g01064 | - | - | csv:101213736 | 393.275 |