Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01072 ATGGCTCGGATCTTTGAGTATTTTGTGGTTTGTGGGATCGGGCCGGAGATTCGGACTCTAGACGGGAACAAGGGATTTCATGGATTCAGTCACTTGTATCTAGCGTCTCTTCTTGACCAGTATCCTCCTTCCAATCATTCTCTTTATCCTCCTCCACCACCTCAGCTCGCAACGTGTGTTCTACCAGCTGGGGTAGAGTTTTTTTCATCGGGCTTTGATTCCAGTGACGCCTCCACTTTTCCGCGGAGTTATCCGATTGTTTTGACTGAGGGCGATGGGTCAAAAATTTATGTCAGTTGCATTGCTTTTAGAGACCCTGTTAGTGAGGATATTGCCGAAGCCTACCGCCTTCCACCAAATTCTTATGCTGATAAATGTATCTGTATTGTTTCTCGTTCACCCAGCTTCCATGTCCTTAAAGATGCGCTGGAGGAATTATTTGCTTTGTGCTTCTCCAGCAGTGGAAGTAGCAAGCCTCTGTGGGACATCATAGCATTCATGATCTCCAATGTACCTCTGCCGACTCCTGGGAAGGAACGGATTTTGTTTGGCATTGAGAATTGTCTTCTTTCCGTTCAGGCTCCACCAAAGGATGGGCTTCCCCATGCCGATATTTCGTTTCAGCCGCTTATGCAGTGCTTGGATTTGGAAAATTTAATCAAACTTTTCACTGCCGTCTTGCTGGAGAGGAGGATTCTTCTTCGATCAAACAAGTATTCACTTTTAACTCTTGTATCAGAAGCCATTTGTCATTTAATATATCCATTTAGATGGCAGCATGTCTACATTCCGTTACTCTTTTTCAGTGGAGTAGACTATATTGATGCTCCCACACCGTATATGATGGGTCTTCATTCCGGCGTTGATACATCCTATCTGGCAATGGATGGTGTTGTTGTAGTGGACCTTGAGTATAATTGTATCACAACCACTGAGGACATACCCCCTATTCCAGAACCAGAGCTCGGATCTTTGCGTAGCGAGCTGATGAAATTATTATATCCCAATGTTGTCAGCATAGATCAAATGAGGTCTGATTTGCGTAGCTCGTGTGAGCAGTACCCTAGAGGTATCTGCAAGCCTTGGGGAGAAGACCATGACCTTCAGCTTAGGTTGATATTTTTGAAATTCTTTGCATCACTCTTAAGTGGCTATCGCAATTTTATAGAAAACAGTGAGACAGATGCCTTCAATACACAAGCATTCTTGAAGAAGCGTTCACGATCAACTAATCAACCAGAAGATCCTATGTCCCAAGGGTTCTTAGACTATCTAGAGAGATGCATAAGTTCTGATGAAAGTAATATCAACATTCTTGACAAGTTACAAGATGCAATTGGGAGGGGTCAAAATCCTCTTTCAATTCTCCCGTCCTCATTGGCTGAACCTGAGATCATAACAATTTCTGACCCTGATATGGGATCATCAGGTTCTGGTGCGAAGTACACTTATGATAGATTTCCTTCAAACGTCAGAACTGAGGAGCAGGAAGAAAAGAGACAACAAATACTAGCAGCAGTGCGTGGAGCTTTTGAATATTCTGGAAAGCATAACCCTAATTCACCTTCTATGCTGATGGGCAGGGATCCGAAAGCACCAAGCCTCAGTCCAATGGAGAGGGCTGCTGAAAGAGAGCGCATGGTTTTGGACATAAAAGTCAAACTACAGGGTCTCTGGCTACGTCTTCTGAAACTGGGTGCAACTGATGATCCTCTTTCTTCTTTTGAATATGGCACTATTCTCGCTTTGATCGAGTCTGATGCAGAGGGAATTGGTGGTAGTGGGTTTGTTGAGTGTATTAGAGAGCACATAAATACTGGATGGCTTTGTCAGTTAACCGATGAACAGTTTATTGCTGTGAAAGAATTGCTAAAAACAGCAATCAGTCGTGCAACTTCACGAAATGATATATTGACAATTAGGGATGCCCTTGAAGTGTCTGGTGAAATATACAAGAAAGACCCTAATAATGTTCCTGATTACATCCAACGCCATCTTATTTCTTTATCTATATGGGAGGAGTTAAGGTTTTGGGAAGGTTATTTTGATTATTTGATGGAACAGTCTTCAAATAAATCCGCCAATTATACATCTCTGGTTTCTGCACAGCTAATTGTTATGGCATCGCATATGGCTGGACTTGGCCTTCCTGACATCGATGCTTGGTACATGATTGAGACAATTGCGGAGAAAAACAGCATAGGATACAAACAACTTATAAAGCTTCGAGGTTTCTTATCCCATATCCAGCAGCTGCGCATTAGTTATTGGGGACTCTCTGCTGTTAAGTCTCAATCCACATCTGCCCATGCAACGCCATCTCCGCATCCCAAAGATGGATCTGATCAGAATCAGCAGCCTGCTGAGGCTTCTGTTGTTGGAAGAAGCTGGGTTCAGAGCATGTTCAGCAGGGACACATCTGCAAGGATTAACTTGGGTCGTAGTGGCCGTTGGACTGCTGATGTCCCGAGCGAGAGTGGTACTTCTCAAAGACAAGATTTACCCTCGGCTGGGCAGAAAAAAGTTCAAAGCAATATTCGCGTTCTTAGGGGTCATAGTGGAGCTGTGACAGCACTTCATTGTGTTTCAAAAAGGGAGGTGTGGGACTTGGTGGGAGACCGTGAGGATGCAGGTTTCTTCATTAGTGGAAGCACAGACTGCTTGGTCAAGATATGGGATCCAAGTCTTCGTGGTTCTGAACTGCGAGCAACTTTAAAGGGTCACACAGGACCTGTTCGTGCGATTAATTCTGATCGAGGAAAAGTAGTTTCTGGGTCTGATGATCACTCAGTTATTGTATGGGATAAGCAAACAACCCAGCTTCTAGAAGAGCTGAAAGGCCACGATGCACAGGTCAGTTGTGTGCGTATGCTATCAGGTGAACGTGTCCTTACCGCTGCGCATGATGGAACCGTGAAGATGTGGGATGTCAGAACTGATACTTGTGTAGCAACTGTTGGTCGTTGCTCTAGTGCAGTTATATGCATGGAATATGATGACTCTACGGGGATATTGGCTGCTGGTGGTAGAGATACAATAGCAAATATCTGGGACATCCGTGCTGGCCGGCAAATGCACAAGCTCTTAGGTCATACGAAATGGATACGCTCAATAAGAATGGTAGGAGACACTATTGTTACTGGTAGTGATGATTGGACCGCTAGACTTTGGTCTGTTTCTCGAGGAGCATGTGATGCTGTTCTAGCATGCCATGCTGGCCCAATATTGGCCGTAGAGTATTCTACACTGGATAAAGGAATAATAACTGGTTCATCTGATGGACTTCTTCGTTTTTGGGAAAACGAGGATGGAGGTATTAGATGTGTGAAGAATGTCACCATTCATAGTGCTGCCATACTGTCCATCAGTGCTGGGGAACATTGGTTAGGAATTGGAGCGGCAGATAACTCTATGTCCCTATTTCATCGGCCACAAGAGAGACTCGGTGGCTTCTCTAACTCGGGTGCAAAAATGGCTGGGTGGCAACTGTACAGAACCCCACAAAAGACTGCAGCCATGGTACGATGCGCATCTTCGGACCTCGAAAGGAAACGAATATGCACTGGTGGTCGTAATGGCCTTCTGAGGCTCTGGGAAGCAACTATCAACATCTGA 3615 44.65 MARIFEYFVVCGIGPEIRTLDGNKGFHGFSHLYLASLLDQYPPSNHSLYPPPPPQLATCVLPAGVEFFSSGFDSSDASTFPRSYPIVLTEGDGSKIYVSCIAFRDPVSEDIAEAYRLPPNSYADKCICIVSRSPSFHVLKDALEELFALCFSSSGSSKPLWDIIAFMISNVPLPTPGKERILFGIENCLLSVQAPPKDGLPHADISFQPLMQCLDLENLIKLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSYLAMDGVVVVDLEYNCITTTEDIPPIPEPELGSLRSELMKLLYPNVVSIDQMRSDLRSSCEQYPRGICKPWGEDHDLQLRLIFLKFFASLLSGYRNFIENSETDAFNTQAFLKKRSRSTNQPEDPMSQGFLDYLERCISSDESNINILDKLQDAIGRGQNPLSILPSSLAEPEIITISDPDMGSSGSGAKYTYDRFPSNVRTEEQEEKRQQILAAVRGAFEYSGKHNPNSPSMLMGRDPKAPSLSPMERAAERERMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHINTGWLCQLTDEQFIAVKELLKTAISRATSRNDILTIRDALEVSGEIYKKDPNNVPDYIQRHLISLSIWEELRFWEGYFDYLMEQSSNKSANYTSLVSAQLIVMASHMAGLGLPDIDAWYMIETIAEKNSIGYKQLIKLRGFLSHIQQLRISYWGLSAVKSQSTSAHATPSPHPKDGSDQNQQPAEASVVGRSWVQSMFSRDTSARINLGRSGRWTADVPSESGTSQRQDLPSAGQKKVQSNIRVLRGHSGAVTALHCVSKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTGPVRAINSDRGKVVSGSDDHSVIVWDKQTTQLLEELKGHDAQVSCVRMLSGERVLTAAHDGTVKMWDVRTDTCVATVGRCSSAVICMEYDDSTGILAAGGRDTIANIWDIRAGRQMHKLLGHTKWIRSIRMVGDTIVTGSDDWTARLWSVSRGACDAVLACHAGPILAVEYSTLDKGIITGSSDGLLRFWENEDGGIRCVKNVTIHSAAILSISAGEHWLGIGAADNSMSLFHRPQERLGGFSNSGAKMAGWQLYRTPQKTAAMVRCASSDLERKRICTGGRNGLLRLWEATINI 1204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8891765 8906938 + CmoCh13G010720.1 Cmo13g01072 395127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01072 1204 ProSitePatterns Trp-Asp (WD) repeats signature. 1005 1019 IPR019775 -
Cmo13g01072 1204 MobiDBLite consensus disorder prediction 767 790 - -
Cmo13g01072 1204 CDD WD40 845 1141 - -
Cmo13g01072 1204 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 945 979 - -
Cmo13g01072 1204 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
Cmo13g01072 1204 ProSiteProfiles Tripartite DENN domain profile. 19 444 IPR037516 -
Cmo13g01072 1204 Gene3D - 1004 1203 IPR015943 GO:0005515
Cmo13g01072 1204 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1068 1100 - -
Cmo13g01072 1204 Gene3D - 202 387 IPR043153 -
Cmo13g01072 1204 MobiDBLite consensus disorder prediction 821 841 - -
Cmo13g01072 1204 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 905 935 - -
Cmo13g01072 1204 SMART uDENN_cls 1 104 IPR005113 -
Cmo13g01072 1204 Pfam WD domain, G-beta repeat 844 893 IPR001680 GO:0005515
Cmo13g01072 1204 Pfam WD domain, G-beta repeat 1023 1058 IPR001680 GO:0005515
Cmo13g01072 1204 Pfam WD domain, G-beta repeat 903 935 IPR001680 GO:0005515
Cmo13g01072 1204 Pfam WD domain, G-beta repeat 940 976 IPR001680 GO:0005515
Cmo13g01072 1204 ProSiteProfiles Trp-Asp (WD) repeats profile. 1028 1067 IPR001680 GO:0005515
Cmo13g01072 1204 Pfam uDENN domain 36 103 IPR005113 -
Cmo13g01072 1204 ProSiteProfiles Trp-Asp (WD) repeats profile. 990 1027 IPR001680 GO:0005515
Cmo13g01072 1204 SMART DENN_cls 122 306 IPR001194 -
Cmo13g01072 1204 SMART dDENN_cls 366 428 IPR005112 -
Cmo13g01072 1204 ProSiteProfiles Trp-Asp (WD) repeats profile. 1068 1100 IPR001680 GO:0005515
Cmo13g01072 1204 PANTHER C-MYC PROMOTER BINDING PROTEIN 3 1204 - -
Cmo13g01072 1204 MobiDBLite consensus disorder prediction 814 841 - -
Cmo13g01072 1204 Gene3D - 1 176 - -
Cmo13g01072 1204 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 3 1204 - -
Cmo13g01072 1204 Gene3D - 835 1003 IPR015943 GO:0005515
Cmo13g01072 1204 PRINTS G protein beta WD-40 repeat signature 963 977 IPR020472 -
Cmo13g01072 1204 PRINTS G protein beta WD-40 repeat signature 922 936 IPR020472 -
Cmo13g01072 1204 PRINTS G protein beta WD-40 repeat signature 1045 1059 IPR020472 -
Cmo13g01072 1204 ProSitePatterns Trp-Asp (WD) repeats signature. 963 977 IPR019775 -
Cmo13g01072 1204 SUPERFAMILY WD40 repeat-like 846 1199 IPR036322 GO:0005515
Cmo13g01072 1204 ProSiteProfiles Trp-Asp (WD) repeats profile. 905 944 IPR001680 GO:0005515
Cmo13g01072 1204 SMART WD40_4 1021 1058 IPR001680 GO:0005515
Cmo13g01072 1204 SMART WD40_4 938 976 IPR001680 GO:0005515
Cmo13g01072 1204 SMART WD40_4 1061 1100 IPR001680 GO:0005515
Cmo13g01072 1204 SMART WD40_4 1160 1199 IPR001680 GO:0005515
Cmo13g01072 1204 SMART WD40_4 898 935 IPR001680 GO:0005515
Cmo13g01072 1204 SMART WD40_4 979 1018 IPR001680 GO:0005515
Cmo13g01072 1204 SMART WD40_4 1105 1142 IPR001680 GO:0005515
Cmo13g01072 1204 SMART WD40_4 842 893 IPR001680 GO:0005515
Cmo13g01072 1204 ProSiteProfiles Trp-Asp (WD) repeats profile. 945 985 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01072 - - - csv:101212131 2237.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00314 Cmo-Chr8:1936043 Cmo13g01072 Cmo-Chr13:8891765 4.62E-06 dispersed
Cmo11g01321 Cmo-Chr11:9133583 Cmo13g01072 Cmo-Chr13:8891765 4.13E-08 dispersed
Cmo13g01072 Cmo-Chr13:8891765 Cmo04g01348 Cmo-Chr4:6870117 2.90E-13 dispersed
Cmo17g01321 Cmo-Chr17:10375825 Cmo13g01072 Cmo-Chr13:8891765 4.47E-09 dispersed
Cmo13g01072 Cmo-Chr13:8891765 Cmo13g00687 Cmo-Chr13:7079839 4.75E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g344 . . . . . Bpe13g00342 Bma06g00001 . Cmo13g01072 . . . . . . Cpe20g00113 . . . . . . . . . . . . . . . Cone2ag0645 . . . Lsi02g00171 Csa01g00654 Chy12g01446 Cme12g01886 . . . . . . . . Sed08g2171 . . Cma13g01032 . Car13g00866 . . . Bhi08g01221 Tan05g2280 Cmetu12g2040 Lac10g0223 Hepe07g2408 . . Cla04g01103 Cam04g1156 Cec01g1666 Cco01g1712 Clacu04g1183 Cmu04g1163 Cre01g1461 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012064 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g01072 Cmo_Chr13 FPKM 44.98798 53.049046 35.754826 32.979458 8.667699 9.88246 8.331555 74.533401 78.157242 77.49762