Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01084 ATGGATTTGAGGAAAATCGTGGTGATTGTTGAGGATGTTGAAGCAGCTAGAACGGCATTGAAGTGGACGCTCAATAACCTAATGCGCTACGGCGATTTGATTACTCTTCTCCATGTATTTCCGACTACAAGATCCAAAAGCGCCTCCAAACTTCGTCATCTCCGATTGAACGGCTATCAATTAGCCCTATCATTCAAAGACCTCTGTACCACTTTCCCCAATACAAAGGTAGAGATTATTGTGACGGAAGGCGGCGGCGACGAAGAAGGTAGAAAGATCGCGGCCGTTGTTAGAGAGATTGGAGCTTCTGTGCTTGTGGTTGGCCTCCATGATCGCAGCTTTCTGTACAAGATGGCTGTGGAGGAAGATGATATAGCAAGGAACTTCAAGTGTAAAGTTCTGGCAATCAAGAGCTCAACAGAAGAACCACAGAAAACCAAAAACGTGGAGGTTATAGCAGCAGCAGCAGCAGCAGTGGACACGGGCAGTTCAACAAACATGGACTTTTCCCAGATCGAGATTGCCAAATTACAAGCTCCTGAAATTCCTCCGCAGAAAATTCCATACAGAATCTGCCCCGACCCTTCTGCCATTATTTGGAGATCCAAGAAATCAAGAACAAGGTGGACCTTGTGA 636 46.07 MDLRKIVVIVEDVEAARTALKWTLNNLMRYGDLITLLHVFPTTRSKSASKLRHLRLNGYQLALSFKDLCTTFPNTKVEIIVTEGGGDEEGRKIAAVVREIGASVLVVGLHDRSFLYKMAVEEDDIARNFKCKVLAIKSSTEEPQKTKNVEVIAAAAAAVDTGSSTNMDFSQIEIAKLQAPEIPPQKIPYRICPDPSAIIWRSKKSRTRWTL 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8971326 8973711 - CmoCh13G010840.1 Cmo13g01084 395139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01084 211 Gene3D HUPs 2 151 IPR014729 -
Cmo13g01084 211 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 208 - -
Cmo13g01084 211 CDD USP_Like 5 136 - -
Cmo13g01084 211 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 137 - -
Cmo13g01084 211 Pfam Universal stress protein family 4 137 IPR006016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01084 - - - csv:101206357 323.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00227 Cmo-Chr11:1122330 Cmo13g01084 Cmo-Chr13:8971326 4.06E-06 dispersed
Cmo13g01084 Cmo-Chr13:8971326 Cmo18g01118 Cmo-Chr18:11556233 3.74E-08 dispersed
Cmo13g01084 Cmo-Chr13:8971326 Cmo04g01798 Cmo-Chr4:9043364 2.40E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g373 . . Bda06g00495 . . . . Bma12g00944 Cmo13g01084 . . . . . . Cpe20g00105 . . . . . . . . . . . . . . . . . . . Lsi02g00371 Csa01g00850 Chy12g01456 Cme12g01896 . Blo15g00358 . . Bpe07g00736 . . . . . . Cma13g01043 . Car13g00875 . . . Bhi08g01202 . . . . . . Cla04g01112 Cam04g1164 Cec01g1675 Cco01g1723 Clacu04g1192 Cmu04g1172 Cre01g1470 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009831 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g01084 Cmo_Chr13 FPKM 1.694073 1.610444 0.513141 0.44482 1.271643 0.866891 1.590809 0.050275 0.0 0.0