Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01090 ATGGGCGGTGGTAGAAGACGAAGGAAGCAGCATTTCAGAAGGATTCATGCCTTTCCTTGTGGTAGAGCATCATTCAAAGATGAACAGTCATTAATTGGAGGGCCAGGGTTCTCAAGGGTAGTTTACTGTAACGATCCAGATGGTTTTGAGGCGAGTCTTCTCAACTATGGAGGCAATTATGTCAAAACTTCAAAGTATACTATTGCTTCATTCTTCCCCAGATCCTTGTTTGAGCAATTCAGAAGGGTTGCCAATTTGTATTTCCTCCTTTGTGCTCTGCTTGCCTTTAGCCCTCTCTCGCCTTATTCGCCCATCAGTAATGTTCTTCCTCTTCTTCTTGTTATTGGTGTCACCATGGGCAAAGAGGGTGTTGAAGATTGGAGGCGAACCAAACAGGACATGGAGATGAATAACAGGATAGTGAAAGTACATATTCAAGAGGGTGAGTTTGTTGAGACTAAATGGATGGACTTGAAAGTTGGGGACGTGGTTAAGGTGGAGAAGGATGAATTCTTCCCTGCTGATCTCATTTTACTGTCGTCGAGTTACGAGGAAGCGATTTGCTATGTCGAGACGATGAATCTTGATGGCGAAACGAATTTGAAGCTAAAGAATGCATTAGAAGCAAGCTCGAACTTCCACGAGGATTCGAGCTTTAAGAATTTCAAGGCTGTAATAAAATGTGAAGACCCCAATGCAAATTTGTATTCCTTTGTGGGAAGTATGGAGCTTGAAGAACAGCAACACCCCCTCAGTCCTCAGCAGCTTCTTCTTCGTGACTCGAAGCTGCGGAACACAGATTTTATATATGGGGTCGTGATCTTCACGGGTCATGATACGAAGGTTATTCAGAACTCAACAGCTCCTCCTTCCAAGAGAAGCAAGATTGAGAAGAGGATGGATAAGATTGTGTTCTTCCTGTTTGCTGTTTTGGTTTTGATATCAATTGCTGGGTCGATTTTTTTCGGAGTTTCGACTAGGGACGATATAGAAAACGGAAGACCTACGAGATGGTACCTTAGGCCAGACGATACGACAATATATTACGATCCCAAAAATGCTCCAGCTGCGGCAATATTGCAGTTTTTGACAGCTCTGATGCTTTTTAGCTATTTGATTCCCATATCATTGTATGTGTCCATTGAAATTGTCAAAGTTCTGCAGAGTGTCTTCATCAACCAAGATCTTCACATGTACCATGAGGAAACTGATAAGCCAGCTCGTGCCCGTACCTCGAATTTGAATGAAGAGCTTGGCCAAGTTGACACCATTCTTTCTGATAAAACCGGGACATTGACCTGCAATTCAATGGAGTTCATCAAGTGTTCGGTGGGCGGGACTGCTTACGGACGAGGAATTACAGAAATAGAGAGAGCTCTTGCAAGACGAAAGGAATCAACTTTACCTGAAAATTTAGAGGCCAACATTGCACGTCTTAGCAGCGAAAAAGCGTTCATTAAGGGGTTCAATTTCAAGGACGAAAGAATAATGGATGGTAATTGGGTGAACGAGCCTCGAGCCGATGTAATCCAGAAGTTCCTACAGCTTCTTGCTATCTGTCATACTGCATTGCCAGAAATTGATGAGGAAACTGGTAACATTTCATATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCCAGAGAATTTGGATTCGAGTTCTATGAACGGACTCAGACAAGCATTTCGTTGCGGGAGTTCGATCCAACCTCGGCCCGAAAAGTCGAAAGATCATATCAACTCCTGGATGTTTTGGAGTTTAATAGCACAAGAAAACGGATGTCTGTGATTGTAAGAGATGCACAGGGACAGCTACTACTACTCTGTAAAGGAGCTGACAGTGTTATGTTTGAAAGACTTGCAAAGAATGGAAGTGAGTTTGAAGAACAGACAAAGGTGCATATCAATGAGTACGCCGATGCCGGTTTAAGAACTTTGGTTCTAGCGTACCGTGAGCTGAAACAGGAGGAGTTTAATAAATTTCATCAAGAATTCATAAAAGCCAAGAACACAGTGAGCACGGATCGTGACGACACCATCGATCAGTTAACAGAAAGCATCGAGAAAGATTTGATTCTTCTTGGTGCTACAGCAGTTGAAGATAAACTTCAAAATGGGGTCCCTGAATGCATTGACAAGCTTGCTCAGGCTGGTATAAAAATATGGGTGCTGACTGGTGATAAAATGGAAACAGCCATCAACATTGGCTTTGCTTGTAGTTTACTTAGGCAAGGAATGAGGCAAATCACTATCAGCTCAGAGACTGTTGAAGGAAAAGCTCTAGACCAAGTTGAAGAGGTTCACAAATCTGCAGCTATCAAGGCGTTTAAGGAAAGCGTGACTCGACAAATAACCGATGCAAAAGCATTACTTGCATCTTCAAGCAAAACCCCGGAAGCGTTGGCTTTGATAATTGATGGAAAGTCGCTCACCTACGCTCTGGAGGACGATGTGAAGAACTTATTTCTGGAGCTTGCCATTGGCTGTGCTTCAGTTATCTGCTGCAGATCATCTCCTAAACAGAAAGCACAAGTTACCCAATTGGTTAAGGTCGAAACAGGTAGCACTACTCTAGCAGTCGGTGATGGTGCAAACGACGTCGGGATGCTTCAAGAAGCGGATATCGGGATTGGTATTAGCGGTGTAGAAGGGATGCAGGCAGTCATGTCGAGCGACATTGCCATAGCACAGTTTCGATATTTGGAACGGCTGCTCCTTGTGCATGGACATTGGTGTTACAGGAGAATCTCTTCCATGATATGCTACTTCTTCTACAAGAACATTGTTTTTGGGTTCACTCTCTTCTTCTTTGAGCTGTATGCATCATTCTCCGGCCAATCTGTATTCGATGACTGGTTCCTTTCGCTGTATAACGTCTTCTTTACGTCTCTCCCTGTGATCGCATTGGGAGTATTCGACCAGGACGTCTCATCCCGGCACTGTCTCAAGTTCCCACTTTTATACCAAGAAGGTGTCCAAAACGTGTTGTTTAGTTGGGTTCGAGTTATCGGTTGGGTGTTCAACGGGCTACTAAGTTCTATCATCATCTTCTTCTTTTGTGTCGGGGCAATCGAATATCAAGCTTTCCGCAGCAGTGGAGAGGTCGTCGGGTTGGAAATTCTGGGCGTCACCATGTACACTTGTGTCGTCTGGGTTGTAAACTGTCAAATGGCATTATCAATCAGTTACTTCACATACATTCAACATCTCTTCATCTGGGGCAGCATCATTCTCTGGTACTTATTCCTTATGGCATATGGAGCTATGAACCCAACCATATCAACCACTGCATTTCAGGTCTTCGTCGAGGCCTGCGCCCCGGCGCCATCGTTTTGGATCCTCACACTATTAGCTCTGGGAGCTTCCCTTCTCCCATACTTCATCTACGCATCAATCCAAATGCGATTCTTCCCAATGAATCATCAAATGATTCAATGGATAAAAGCCGATGGGCACGCGAACGACCCAGAATACTGTCAAGTAGTGAGACAACGATCGTTACGACACACAACCGTCGGTTACACAGCTCGGTTCAAAGCATCAAAGCATCTTAGAGAAATCCCAGAAAGCAACAACCATTAG 3591 44.08 MGGGRRRRKQHFRRIHAFPCGRASFKDEQSLIGGPGFSRVVYCNDPDGFEASLLNYGGNYVKTSKYTIASFFPRSLFEQFRRVANLYFLLCALLAFSPLSPYSPISNVLPLLLVIGVTMGKEGVEDWRRTKQDMEMNNRIVKVHIQEGEFVETKWMDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALEASSNFHEDSSFKNFKAVIKCEDPNANLYSFVGSMELEEQQHPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVIQNSTAPPSKRSKIEKRMDKIVFFLFAVLVLISIAGSIFFGVSTRDDIENGRPTRWYLRPDDTTIYYDPKNAPAAAILQFLTALMLFSYLIPISLYVSIEIVKVLQSVFINQDLHMYHEETDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEIERALARRKESTLPENLEANIARLSSEKAFIKGFNFKDERIMDGNWVNEPRADVIQKFLQLLAICHTALPEIDEETGNISYEAESPDEAAFVIAAREFGFEFYERTQTSISLREFDPTSARKVERSYQLLDVLEFNSTRKRMSVIVRDAQGQLLLLCKGADSVMFERLAKNGSEFEEQTKVHINEYADAGLRTLVLAYRELKQEEFNKFHQEFIKAKNTVSTDRDDTIDQLTESIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMRQITISSETVEGKALDQVEEVHKSAAIKAFKESVTRQITDAKALLASSSKTPEALALIIDGKSLTYALEDDVKNLFLELAIGCASVICCRSSPKQKAQVTQLVKVETGSTTLAVGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFELYASFSGQSVFDDWFLSLYNVFFTSLPVIALGVFDQDVSSRHCLKFPLLYQEGVQNVLFSWVRVIGWVFNGLLSSIIIFFFCVGAIEYQAFRSSGEVVGLEILGVTMYTCVVWVVNCQMALSISYFTYIQHLFIWGSIILWYLFLMAYGAMNPTISTTAFQVFVEACAPAPSFWILTLLALGASLLPYFIYASIQMRFFPMNHQMIQWIKADGHANDPEYCQVVRQRSLRHTTVGYTARFKASKHLREIPESNNH 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8998731 9004051 + CmoCh13G010900.1 Cmo13g01090 395145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01090 1196 SUPERFAMILY Calcium ATPase, transduction domain A 144 284 IPR008250 -
Cmo13g01090 1196 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 829 945 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo13g01090 1196 CDD P-type_ATPase_APLT_Dnf-like 58 1023 - -
Cmo13g01090 1196 Gene3D - 422 434 IPR023214 -
Cmo13g01090 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 50 1141 IPR023298 -
Cmo13g01090 1196 Pfam E1-E2 ATPase 136 378 - -
Cmo13g01090 1196 Gene3D - 118 287 - -
Cmo13g01090 1196 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Cmo13g01090 1196 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 4 1187 - -
Cmo13g01090 1196 Gene3D - 698 903 IPR023214 -
Cmo13g01090 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Cmo13g01090 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 891 1141 IPR032630 -
Cmo13g01090 1196 Pfam Cation transport ATPase (P-type) 535 623 - -
Cmo13g01090 1196 Gene3D - 435 486 IPR023299 GO:0000166
Cmo13g01090 1196 SFLD p-type atpase 409 914 IPR044492 -
Cmo13g01090 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 4 1187 - -
Cmo13g01090 1196 SUPERFAMILY HAD-like 420 918 IPR036412 -
Cmo13g01090 1196 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Cmo13g01090 1196 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Cmo13g01090 1196 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 56 1148 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cmo13g01090 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 488 699 IPR023299 GO:0000166
Cmo13g01090 1196 SFLD Haloacid Dehalogenase 409 914 - -
Cmo13g01090 1196 Gene3D - 542 697 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00333 Cmo-Chr4:1625417 Cmo13g01090 Cmo-Chr13:8998731 0 dispersed
Cmo13g01090 Cmo-Chr13:8998731 Cmo15g01500 Cmo-Chr15:10177017 0 dispersed
Cmo13g01090 Cmo-Chr13:8998731 Cmo18g01081 Cmo-Chr18:11365450 0 wgd
Cmo13g01090 Cmo-Chr13:8998731 Cmo18g00028 Cmo-Chr18:119077 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01090 K01530 K14802 csv:101209427 2182.53