Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01091 ATGACACTTTTGCATAGGAAGTTTCTTCTCAGTTGTTGTGCCAGGTCAGCACCTCAATCCCTCTTTTCTTCTTCTTCTTCTTCTTCACTCGACGTTTGGTGGCTCTGTTTCAGTCATCCAGAGGTAGCGACAATGGCGATGAAGATGGCCGTCAGAGCTTCCGCCGTTACCCCACATCGTTCACTTCCTTCACTGCCTTCGTCCTCTCAAAGATCCGATTCCAAATCTCAATTCCGTCCCATCTCCGTTGGCTTACCGGCGTCCACTACCCTCTCGATGTTAGCCCTAATTTCCTCTCCCTATGAAGCTAGGGCTCTCAATAAGGACCAAATCGTTTCATCTCTCAATGATGTGGAGAAGACGATTGATCAGGTTCAAGAAGCGGGTTCGAATTTCTTTGATATTGCACAACAGCTCATTGACTCTGCTAGAACTATTTTGAAGCCGGGTGTTGATGCGGCGCTGCCGATTGTAAAGCAGGCTGGAGAAGAGGCGCTGAAGGTTGCTTCTCCTACAATTTCTGAGGCTTCAAAGAAAGCCCTCGAAGCACTTCAGGGCTCTGGCATTGACACCCAGCCTGTTCTAACTGCTGCTAAGACAGTAGTAGGTGCAGCGGAACAAACTGGGAAGGTCATTGAGGGTGCCAAGCCTATAGCCTCGTCGACTGTCGAGACAATCTCCACAGCAGACCCTCTTGTAATTGCAGAAATTGCTGGAGCCTTAGCCGTGGCATACCTGCTCTTTCCTCCAATTTGGTCGGCCATATCTTTCAGCTTTCGTGGCTACAAAGGTGAGCTCTCTCCTGCTCAAACACTTGAGCTAATTTCGTCGAGCAATTACGTTCTGATCGATATACGATCCGAGAAAGACAAGGATAAGTCTGGCATTCCTCGCCTTCCATCTAGTGCTAAGAACCAGTTGATTGCCATTCCATTGGAAGAATTACCGAGCAAGTTGCGGGGCATTGTCCGAAATGTAAAGAAGCTAGAAGCTGAACTTTCAGCCATCAAGATATCATATCTCAAGAAACTTAACAAAGGCTCCAATGTAGTGATCTTGGGCTCGTACTCAGACTCGGGAAAAGCAGTTGCAAAAGCACTGACAAGGCTTGGCTTCAAGAACTCCTGGATTGTAACAGATGGGTTTTTAGGTAGCAAAGGTTGGTTACAGAGTCGGTTAGGGACAGATACATATAAGTTCTCATTTGCAGAGATCCTTTCTCCGTCCCGAGTCATCCCCGCCGCAACCAAACGTTTCGGGACGACGTCACTGACAACATCTGGTCAAAAATTGCTTCCTGGTGCTGATTAA 1311 47.67 MTLLHRKFLLSCCARSAPQSLFSSSSSSSLDVWWLCFSHPEVATMAMKMAVRASAVTPHRSLPSLPSSSQRSDSKSQFRPISVGLPASTTLSMLALISSPYEARALNKDQIVSSLNDVEKTIDQVQEAGSNFFDIAQQLIDSARTILKPGVDAALPIVKQAGEEALKVASPTISEASKKALEALQGSGIDTQPVLTAAKTVVGAAEQTGKVIEGAKPIASSTVETISTADPLVIAEIAGALAVAYLLFPPIWSAISFSFRGYKGELSPAQTLELISSSNYVLIDIRSEKDKDKSGIPRLPSSAKNQLIAIPLEELPSKLRGIVRNVKKLEAELSAIKISYLKKLNKGSNVVILGSYSDSGKAVAKALTRLGFKNSWIVTDGFLGSKGWLQSRLGTDTYKFSFAEILSPSRVIPAATKRFGTTSLTTSGQKLLPGAD 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9004084 9006672 + CmoCh13G010910.1 Cmo13g01091 395146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01091 436 CDD RHOD 270 384 - -
Cmo13g01091 436 MobiDBLite consensus disorder prediction 59 78 - -
Cmo13g01091 436 PANTHER CALCIUM SENSING RECEPTOR, CHLOROPLASTIC 49 434 - -
Cmo13g01091 436 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 243 388 IPR036873 -
Cmo13g01091 436 ProSiteProfiles Rhodanese domain profile. 276 397 IPR001763 -
Cmo13g01091 436 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 49 434 IPR044690 GO:0009704|GO:0071277|GO:0090333
Cmo13g01091 436 SMART rhod_4 266 394 IPR001763 -
Cmo13g01091 436 MobiDBLite consensus disorder prediction 60 78 - -
Cmo13g01091 436 Gene3D - 263 402 IPR036873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01091 - - - csv:101209180 644.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00066 Cmo-Chr12:351771 Cmo13g01091 Cmo-Chr13:9004084 1.71E-16 transposed
Cmo13g01091 Cmo-Chr13:9004084 Cmo18g00029 Cmo-Chr18:124883 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo16g00396 . 59 376 Sulfurtransferasese/Rhodanese AT1G79230 73.9 1.2e-145 513.5
Cmo04g00550 . 59 378 Sulfurtransferasese/Rhodanese AT1G79230 74.4 4.4e-145 511.5
Cmo16g00396 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 72.5 8.2e-113 404.1
Cmo04g00550 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 72.5 9.0e-112 400.6
Cmo13g01091 . 79 355 Sulfurtransferasese/Rhodanese AT5G23060 59.4 1.2e-86 317.4
Cmo06g01047 CST 430 803 Sulfurtransferasese/Rhodanese AT4G01050 56.7 1.8e-105 380.6
Cmo11g01284 . 6 609 Sulfurtransferasese/Rhodanese AT1G09280 63.5 2.7e-222 768.8
Cmo04g01124 . 86 450 Sulfurtransferasese/Rhodanese AT2G40760 73.1 1.4e-155 547.0
Cmo03g00106 . 61 259 Sulfurtransferasese/Rhodanese AT2G42220 75.4 2.4e-84 309.3
Cmo14g00061 . 35 213 Sulfurtransferasese/Rhodanese AT3G08920 64.2 7.9e-66 247.7
Cmo10g00089 . 1 294 Sulfurtransferasese/Rhodanese AT4G24750 66.7 5.8e-112 401.4
Cmo02g01321 . 67 249 Sulfurtransferasese/Rhodanese AT5G19370 63.6 1.6e-64 243.8
Cmo16g00940 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 64.9 4.3e-133 471.9
Cmo16g00036 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.6 8.5e-79 290.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g01091 Cmo_Chr13 FPKM 6.202977 7.672443 5.874609 6.405181 11.056911 9.990675 10.902246 6.983117 6.510042 6.199401