Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01096 ATGTTAATCGAGGCGGTCCGGCCACGCTGCCGCTCACCGACTATGGCGGACGATTCAACTGACCCCTTCGCCTCCCCAGAAGATCGCCTAAAGGCCTTAATTTCTTGTCCTTCCGCGAGTACCAAATCCGGGTTTGAAAACGAATCTGCAGAAGGTGAATTTCAAGAAAATCAGCCGCTGATAGACGATAATCCTTCTTCTATCTGTGTAATTTGTTTTTCGGATGATGGAAAAGCGGAGAGAGGTAAGCTTGACTCCTGTGACCACTATTTTTGCTTCGTCTGCATTATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGCAAGGGCAGATTCACTGTTGTTCATAGAATTGCGAAGGATAGCTGTCGTCTACGTGAACGAATTGTTAATATTCCAATGCGGAATCAGGATCACTCTGTTATTGAAAATACTACGAATAGGGATCCATATGCAGAAACATGTTGCACTGTGTGCAAGGGTATGGAAGATGAAGGTCTCATGTTACTCTGCGATCTCTGTGATTCAGCTGCTCATACTTATTGTGTCGGCCTCGGTGCTAATGTGCCTGAAGGCGATTGGTTTTGCCATGATTGTACTATCTCCAGGGCTCAACATGCCGATACTGAATTGAACACTGGTTACAATGATCAGAATCAAACAGAATCTGTTAGAGCCCACATCTCCATTTCCGATATAGTAAAAGAATCTAGTGCTCAAACAGTTGGCATACCTCGCAGAATAGCCCTTTTACATTCAAGTCACGAGCCACCTTCTATTGTCCCCAGTTGGAGAAGCAGAAGCAGCGTGGCCCATAAATCATTGCCTAGTCGTGGTGGTAGAGCTGCTGGAACAAGTGCAAGAACATTACATCGCTGTCGTAACATCCATAGCCATATAAGAGCATTACGTGAAAATTGGGGTGGCTTACGAAGGGGGTCACTGAGCTTTCCCGCTAGCAGCTCATCAACATATTGTGGCAACAGTTCCAAACGAGATATTGGTGCTGCAAACAACCAAACAGGTGAACCCCATTTTTCTACAGCCATTAACATGCAGGCGACATCTGGACTCGAGTGTAACGGAAGCTCTTATGATGTTGAGAAGGCATGGAGGATGATGGAAATTGCAAAGGCAAAGGCCATACGTGAGGGAGATCAAGCCTTGAAACATCCTGCTAGCAGACAAATGAACACAAAAATAAAAGATATTCATACAGCGAAAGGCCAACAGTTCAATATCCAGAAGCTGAAGGAACCAGCAAAGCATAAGAAGGAAATGGGAAAGCAAAGATTGCCCGAGTTGGATAAGAAACTGTGTTGTCCTGTAGCAAGTAAGAAGAGTAAAGCTTCTGATGAGTTTTTTCCTACCAGCTCATCTAGTTATGGAGAATCCTCCCTGGGTAATATGGTCCAAACTTCTCGAGTTGATTTCAACTATGAAAATAGAAGAAAGCTATCAAACAAAATCGTGGATGAACTTTCTTCATCCTCCACAATGACACAAGCCTCAGAGAAAGGCCATGCCTCTTGTGAGGCTGGCAACGATCACGATCCCAAAAGTGAGATACGAACACTGGTCAAGATCAACCTAAAACTCCTAAGCCGAGACAAAAATTTGGGATATGAAAGATACAAGGAAGTAGCAAGGCTTGCAACTCACACCATCATGGCAGCATGTGGTTTAGAACCCCCTCCAAAACCCAGCAAGCGATTCCTATCGTGCTTGGTTTGCAAGCACACAGAAGAAGAAGTCGGGCAGCTTCACAGGTCCACTCTGATGCCAGAATCTTGCAGGGAATGCTTCCTGGTGTATGTGAAGGATGTTGTTAATGCCCTGATGTTAGAAAAACTGGAGGTGGGTTCCTGA 1872 45.09 MLIEAVRPRCRSPTMADDSTDPFASPEDRLKALISCPSASTKSGFENESAEGEFQENQPLIDDNPSSICVICFSDDGKAERGKLDSCDHYFCFVCIMEWARIESRCPACKGRFTVVHRIAKDSCRLRERIVNIPMRNQDHSVIENTTNRDPYAETCCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGANVPEGDWFCHDCTISRAQHADTELNTGYNDQNQTESVRAHISISDIVKESSAQTVGIPRRIALLHSSHEPPSIVPSWRSRSSVAHKSLPSRGGRAAGTSARTLHRCRNIHSHIRALRENWGGLRRGSLSFPASSSSTYCGNSSKRDIGAANNQTGEPHFSTAINMQATSGLECNGSSYDVEKAWRMMEIAKAKAIREGDQALKHPASRQMNTKIKDIHTAKGQQFNIQKLKEPAKHKKEMGKQRLPELDKKLCCPVASKKSKASDEFFPTSSSSYGESSLGNMVQTSRVDFNYENRRKLSNKIVDELSSSSTMTQASEKGHASCEAGNDHDPKSEIRTLVKINLKLLSRDKNLGYERYKEVARLATHTIMAACGLEPPPKPSKRFLSCLVCKHTEEEVGQLHRSTLMPESCRECFLVYVKDVVNALMLEKLEVGS 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9022105 9025997 + CmoCh13G010960.1 Cmo13g01096 395151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01096 623 SMART ring_2 69 109 IPR001841 -
Cmo13g01096 623 SMART ring_2 157 200 IPR001841 -
Cmo13g01096 623 SMART PHD_3 156 201 IPR001965 -
Cmo13g01096 623 SUPERFAMILY RING/U-box 62 117 - -
Cmo13g01096 623 Pfam PHD-finger 157 201 IPR019787 -
Cmo13g01096 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 228 IPR013083 -
Cmo13g01096 623 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 24 619 - -
Cmo13g01096 623 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Cmo13g01096 623 PANTHER F18C1.6 PROTEIN 24 619 - -
Cmo13g01096 623 MobiDBLite consensus disorder prediction 497 518 - -
Cmo13g01096 623 ProSiteProfiles Zinc finger PHD-type profile. 154 203 IPR019787 -
Cmo13g01096 623 Pfam Ring finger domain 69 110 IPR001841 -
Cmo13g01096 623 ProSiteProfiles Zinc finger RING-type profile. 69 110 IPR001841 -
Cmo13g01096 623 MobiDBLite consensus disorder prediction 262 287 - -
Cmo13g01096 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 122 IPR013083 -
Cmo13g01096 623 SUPERFAMILY FYVE/PHD zinc finger 148 203 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01096 - - - cmo:103495032 956.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01298 Cmo-Chr11:8822347 Cmo13g01096 Cmo-Chr13:9022105 2.53E-40 dispersed
Cmo13g01096 Cmo-Chr13:9022105 Cmo11g01699 Cmo-Chr11:12024379 7.25E-08 dispersed
Cmo13g01096 Cmo-Chr13:9022105 Cmo14g00653 Cmo-Chr14:3295030 1.53E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10875 PF00628 PHD 2.80E-09 CL0390 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g01096 Cmo_Chr13 FPKM 13.453674 15.925164 5.516421 5.970929 23.780958 22.331945 25.833487 15.582609 15.290183 15.7257