Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01103 ATGGGGAGGGGAAGAGTGCAGTTGAAGAGGATTGAGAACAAGATTAATATGCAAGTGACCTTCTCCAAGAGAAGGTCTGGTCTGCTGAAGAAAGCTCATGAGATTTCAGTTCTGTGCGATGCTGAGGTTGCTCTTATCGTCTTCTCCACCAAGGGCAAGCTGTTTGAATACTCCACTGATTCTTGCATGGAGAAGATCCTCGAGCGTTATGAGAGGTACTCATACGCAGAGAGGCGGCTCATTGCAAATGATAGCCAATCAAACGGAAATTGGACTCTTGAATATGCGAAGCTTAAAGCCAGAATAGAGGTTCTTCAGAAGAACCACAGGCATTTCATGGGGGAAGATCTTGAGTCCTTGAGCCTAAAAGAGCTTCAAAATATTGAGCAACAACTTGATTCTGCGCTCAAGCATGTAAGAACCAGGAAGAACCAACTCATGCATGAATCCATTTCAGATCTTCAGAAAAAGGACAAGGCGCTTCAGGACCAAAACAACATGTTAGCCAAGAAGATAAGGGAGAAGGAGAAAGCACAAGCTCAAAATCCACAAATGGAGCAGCACCATCAGCAGCATAGCCATGCCATTGAACCTTCTCCACTACTTCTTCCTCAGCCATTCCTATCTCTTAACATGCCTTGTCCTTACCCAACACACGCCACCGGACACGAAGAATCCGCCGCCAACCACGACAGATCCGGCACCCTCCTGCCGCCCTGGATGCTCGGCCACCACCTTGGTAACTGA 747 47.39 MGRGRVQLKRIENKINMQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLIANDSQSNGNWTLEYAKLKARIEVLQKNHRHFMGEDLESLSLKELQNIEQQLDSALKHVRTRKNQLMHESISDLQKKDKALQDQNNMLAKKIREKEKAQAQNPQMEQHHQQHSHAIEPSPLLLPQPFLSLNMPCPYPTHATGHEESAANHDRSGTLLPPWMLGHHLGN 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9050079 9053269 - CmoCh13G011030.1 Cmo13g01103 395158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01103 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo13g01103 248 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 229 - -
Cmo13g01103 248 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Cmo13g01103 248 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo13g01103 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo13g01103 248 Coils Coil 88 108 - -
Cmo13g01103 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo13g01103 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Cmo13g01103 248 MobiDBLite consensus disorder prediction 219 248 - -
Cmo13g01103 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cmo13g01103 248 Coils Coil 151 188 - -
Cmo13g01103 248 MobiDBLite consensus disorder prediction 174 195 - -
Cmo13g01103 248 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cmo13g01103 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo13g01103 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo13g01103 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo13g01103 248 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo13g01103 248 Coils Coil 125 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01495 Cmo-Chr3:10712460 Cmo13g01103 Cmo-Chr13:9050079 5.81E-40 dispersed
Cmo12g00088 Cmo-Chr12:477126 Cmo13g01103 Cmo-Chr13:9050079 1.11E-82 dispersed
Cmo13g01103 Cmo-Chr13:9050079 Cmo17g01377 Cmo-Chr17:10695432 1.26E-58 dispersed
Cmo01g00454 Cmo-Chr1:2174856 Cmo13g01103 Cmo-Chr13:9050079 1.97E-59 wgd
Cmo13g01103 Cmo-Chr13:9050079 Cmo14g01180 Cmo-Chr14:9737822 7.66E-73 wgd
Cmo13g01103 Cmo-Chr13:9050079 Cmo18g00019 Cmo-Chr18:78461 7.15E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10878 PF01486 K-box 1.50E-30 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01103 K09264 - csv:101207225 399.438