Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01107 ATGATTTGTGTGGCAGCGGCATACGACTCTCTCGACCCGAATGGAAACGTCGAAGTCAAATGGGATGTCATGTCCTGGACTGCAGATGGTTATGTGGCAATTGTGACGATAACCAACTTTCAGATGTATCGACATATCAGGAGTCCTGGATGGAGCTTGGGATGGGTATGGGCAAAGAGAGAGGTCATCTGGTCCATACAGGGAGCTGAAGCTGTTGATCAAGGAGATTGTTCCACATTTACAGAAACTATGCCACACAGCTGCAAACGAGACCCATTGGTGGTTGACTTGCTTCCTGGTACTCCTTATAACCAACAGGTAGCTAGGTGCTGCAAAGGTGGTGTCTTGACCTCTTGGGGTCAAGATCCTTCTTCTGCTGTCTCTTCCTTCCAATTCACTGTTGGTCACTCTGGTAATTCAAACAAAACAGTGAGACTTCCCAAGAATTTCACCTTCCATGGTCCGGGGCGAGGCTATACATGTAGCCCCCCAAAGATTGCTCCCAACTCAGCTTTCTACTCATCTGATGTGACATGGAATGTGACATGCACTTACACGCAGTTTCTTGCATCTGAAACGCCAACCTGCTGTCTCTCCATGTCATCATTCTATAGCTCAAAAATCACTCCTTGTCAAGCATGTGCTTGTGGCTGCCAAGACAGAACGGCATGTATTCTGAAGGAATCAGATCTCGAAAGCGTTACGGGGTTGAATGCTCCATTGCTGCAGTGCACGGCACATAACTGTCCCATTCAAGTCCACTGGCATGTCAAGGAAAACTACAAGGGGTATTGGCGGCTCATGATAACCATCACCAATCTCAACTATCGACTTAACTATTCACAATGGACTCTGGTCGTGGAGCACCCAAATTTCAGCAACATAATGGAAGTTTATAGCTTTGTCTATAGGCCAATTGCCCCCTTCATCTCTAACAACGGTACAGCTCTGTTCTATGGCTTGAAATCTGTGAATGATGTGCTACTTGAAGCAGGGCCAAATGGAAACGTTCAGTCAGAGATGATTTTGCAGAAGGATTCAGCCTTTACGTTGGAACAAGGGTGGGCTTTCCCTCGAAAAGTGTACTTTGATGGAGATGAATGTGTGATGCCGCTGCCTGAATCCTTCCCCTTCCTACCCAACTTGGCTAATGCAAATCCAGTGCCATTGTCAGCGCTAGCTCGCATTTTGGTTGCCATCTTCCTTGCGCTGTTATCTTAG 1221 46.93 MICVAAAYDSLDPNGNVEVKWDVMSWTADGYVAIVTITNFQMYRHIRSPGWSLGWVWAKREVIWSIQGAEAVDQGDCSTFTETMPHSCKRDPLVVDLLPGTPYNQQVARCCKGGVLTSWGQDPSSAVSSFQFTVGHSGNSNKTVRLPKNFTFHGPGRGYTCSPPKIAPNSAFYSSDVTWNVTCTYTQFLASETPTCCLSMSSFYSSKITPCQACACGCQDRTACILKESDLESVTGLNAPLLQCTAHNCPIQVHWHVKENYKGYWRLMITITNLNYRLNYSQWTLVVEHPNFSNIMEVYSFVYRPIAPFISNNGTALFYGLKSVNDVLLEAGPNGNVQSEMILQKDSAFTLEQGWAFPRKVYFDGDECVMPLPESFPFLPNLANANPVPLSALARILVAIFLALLS 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9067595 9069513 + CmoCh13G011070.1 Cmo13g01107 395162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01107 406 PANTHER PROTEIN COBRA 2 402 IPR006918 GO:0010215|GO:0031225
Cmo13g01107 406 PIRSF COBRA 1 406 IPR006918 GO:0010215|GO:0031225
Cmo13g01107 406 Pfam COBRA-like protein 31 186 IPR006918 GO:0010215|GO:0031225
Cmo13g01107 406 PANTHER COBRA-LIKE PROTEIN 2 402 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00221 Cmo13g01107 CCT
Cmo10g00308 Cmo13g01107 CCT
Cmo11g00221 Cmo13g01107 ECH
Cmo10g00308 Cmo13g01107 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01107 Cmo-Chr13:9067595 Cmo19g00732 Cmo-Chr19:7566939 1.96E-69 dispersed
Cmo01g00448 Cmo-Chr1:2161265 Cmo13g01107 Cmo-Chr13:9067595 1.59E-176 wgd
Cmo10g00306 Cmo-Chr10:1366269 Cmo13g01107 Cmo-Chr13:9067595 0 wgd
Cmo11g00221 Cmo-Chr11:1105614 Cmo13g01107 Cmo-Chr13:9067595 0 wgd
Cmo13g01107 Cmo-Chr13:9067595 Cmo14g01186 Cmo-Chr14:9952375 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01107 - - csv:101203708 694.501