Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01109 ATGTCTTTAGAGCATGAATTTCTGTTTGTTCCGGCATCTGGGTTTGCCTCAACAATGGCAAATAATGTGAATCTCTTTCTTTGTTTCCTTCTCTTTGTGGCTGTTTTTGGCCTTTGCCTTAGCCCCGGTGGTCTAGCTTGGGCTCTGGTTTCAAGGCCAAGAAACAAACCCATCATTCCTGGCCCTTGTGGCACTCCTTTTTTAGGTCAAGTTTTTACCTTTACTACTTCTCTCACTCATAGAGTTCTTGCCAACCTCGCCCATACCTTAAAGGCCAAATCTTTGATGTCATTCTCTGTTGGGTTCACTCGTTTTGTGATCTCTAGCAACCCCATCACTGCCAAAGAGCTTTTGAACAGCTCGGCGTTTGCTGATCGTCCCATTAAGGAGTCAGCTTACGAGCTTTTGTTCCATAGAGCAATGGGGTTCGCTCCATATGGGGAGTATTGGAGGAACCTTAGGAGAATCTCAGCCACTCATTTGTTTAGCCCCAAAAGGATATCTAATTTTGGGGAATTGAGGCAGAGAATTGGGGTTGAAATGGTGGAGGAAATTAAGGGTTTGATGGAAAAAAATGGGGAAATTGAAGTGAGGAAGGTTTTGCATTTTGGGTCGTTGAATAATGTTATGGGGAGTGTGTTTGGGAAAAGGTATGAGTTTTTTGGTGATGGTGGGAGTAATTGCGAGGTTGAGGGATTGGTGAGTGAAGGGTATGATTTGCTTGGGAGTTTCAATTGGAGTGATCACTTCCCTGTTTTGGGTTGGTTGGATTTGCAAGGCGTGAGGAAAAGGTGTAAAATTTTGGTGGGGAAAGTGAATGTTTTTGTTGGGAAAATCATAGAAGATCATAGAATGAATAGAAAAGGAAAGGGTGTTGTTGTTCATAATGATAATGACGATGAAGATGATGACACCAAATCTGGAGATTTCGTTGATGTATTGCTTGATTTGGAAAAGGAAAACAAGCTCACCGACTCTGATATGATTGCTGTGTTATGGGAAATGATCTTCCGAGGAACAGACACGGTGGCGATTCTCCTAGAATGGATATTAGCCAGAATGGTTCTTCATCCCGACATCCAATCCAAACTCCAATCGGAAATCGACCGCGTTGTTATACCCGGCCGGAATGTCTCCGATTCCGACCTCCCAAATCTCCCTTATCTCCATGCAGTCGTTAAAGAGACTCTACGAATGCACCCTCCTGGCCCACTTCTCTCGTGGGCCCGCCTCGCCATCCACGACACCCACGTCGGCGGTCACTTCATTCCCGCCGGTACTACGGCGATGGTCAACATGTGGGCCATAACCCACGACCAACATATCTGGTCCGACCCGACAACATATGACCCGGAGAGGTTCCTTAAAGAGGAGGTGGCTATAATGGGGTCTGACTTACGGCTAGCACCGTTTGGATCTGGAAGACGGGTGTGCCCTGGGAAAGCCATGGGGTTAGCCACTGTGGAGCTTTGGCTAGCTCAGTTGGTTCACAGGTTCAAATGGGTTCAGGTGAATGGTGGGTGTGGAAATGGCGTGGACTTGTCCGAGTGTTTGAAGCTGTCGCTGGAGATGAAACAGCCTTTGATCTGTAGGGCTGTTCCGAGGTTTTAG 1611 46.68 MSLEHEFLFVPASGFASTMANNVNLFLCFLLFVAVFGLCLSPGGLAWALVSRPRNKPIIPGPCGTPFLGQVFTFTTSLTHRVLANLAHTLKAKSLMSFSVGFTRFVISSNPITAKELLNSSAFADRPIKESAYELLFHRAMGFAPYGEYWRNLRRISATHLFSPKRISNFGELRQRIGVEMVEEIKGLMEKNGEIEVRKVLHFGSLNNVMGSVFGKRYEFFGDGGSNCEVEGLVSEGYDLLGSFNWSDHFPVLGWLDLQGVRKRCKILVGKVNVFVGKIIEDHRMNRKGKGVVVHNDNDDEDDDTKSGDFVDVLLDLEKENKLTDSDMIAVLWEMIFRGTDTVAILLEWILARMVLHPDIQSKLQSEIDRVVIPGRNVSDSDLPNLPYLHAVVKETLRMHPPGPLLSWARLAIHDTHVGGHFIPAGTTAMVNMWAITHDQHIWSDPTTYDPERFLKEEVAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLVHRFKWVQVNGGCGNGVDLSECLKLSLEMKQPLICRAVPRF 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9082814 9084507 - CmoCh13G011090.1 Cmo13g01109 395164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01109 536 PRINTS P450 superfamily signature 338 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g01109 536 PRINTS P450 superfamily signature 391 402 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g01109 536 PRINTS P450 superfamily signature 469 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g01109 536 PANTHER CYTOCHROME P450 FAMILY PROTEIN 8 535 - -
Cmo13g01109 536 Pfam Cytochrome P450 60 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g01109 536 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 471 480 IPR017972 GO:0005506|GO:0016705
Cmo13g01109 536 PRINTS E-class P450 group I signature 204 222 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g01109 536 PRINTS E-class P450 group I signature 327 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g01109 536 PRINTS E-class P450 group I signature 347 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g01109 536 PRINTS E-class P450 group I signature 390 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g01109 536 PRINTS E-class P450 group I signature 432 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g01109 536 PRINTS E-class P450 group I signature 468 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g01109 536 PRINTS E-class P450 group I signature 478 501 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g01109 536 PANTHER CYTOCHROME P450 78A7-RELATED 8 535 - -
Cmo13g01109 536 Gene3D Cytochrome P450 48 531 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo13g01109 536 SUPERFAMILY Cytochrome P450 59 535 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00479 Cmo-Chr5:2236593 Cmo13g01109 Cmo-Chr13:9082814 0 dispersed
Cmo08g00824 Cmo-Chr8:5248033 Cmo13g01109 Cmo-Chr13:9082814 1.28E-174 dispersed
Cmo13g01109 Cmo-Chr13:9082814 Cmo18g00685 Cmo-Chr18:8754063 0 dispersed
Cmo13g01109 Cmo-Chr13:9082814 Cmo12g00085 Cmo-Chr12:453319 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01109 K20619 - csv:101203458 846.269