Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01114 ATGACAGGAAGAGTAAATAATATGATCTCAAGATTGAAGCCAGAGGGCGTTCATGTTGAAGCAAAACAAATGGAGGGCAAAAGGAAGAAGGGGCCTTCAAGGCAAGGGCCATTTCTTAGAGGCAATCCAAGAATTTTTAGAGTTTCTCCTTTGTTTGGAGGAAAAGACAGGCATAGCAAAGTTTGCACAATGAAGGGCTTAAGAGACAGAAGGATTAGGCTTTCAGCTCCCACTGCTATTCAACTTTATGATTTGCAGAACAGACTTGGCCTCAGCCAACCCAGCAAAGTCATAGACTGGCTGATTGATGTCACAAGAGTTGATATTGATAAGCTCCCACCACTCCATTTTCCAAAAGATTTTGACCCAAATGCCTCGTTTCTTCATCTTGATATTGCAGATGCTGCAGCGAAGGCCAAACATGAAGAAACTGGGATGCTTTTGCTTCAGAAGTTGTCTCCTTCACCCAACAATGCTTCTTTTTCTGCTCTTCAGCTTCAAACCAACGCCATGACTGAAAACTGTTGCCATTTTGACCCTCCAAGCTTTCCATTCCCATTAATGGATCAGGCCAATCCAGCTTCATTTTCCTCGCCTTCTGAGCAGTTGCTGTTCCGTCCATTGACGATGCCACCCGAAGTTTCTTCTTACCTTCGTAACGGTGGAAATTAA 672 43.75 MTGRVNNMISRLKPEGVHVEAKQMEGKRKKGPSRQGPFLRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVIDWLIDVTRVDIDKLPPLHFPKDFDPNASFLHLDIADAAAKAKHEETGMLLLQKLSPSPNNASFSALQLQTNAMTENCCHFDPPSFPFPLMDQANPASFSSPSEQLLFRPLTMPPEVSSYLRNGGN 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9110094 9110765 - CmoCh13G011140.1 Cmo13g01114 395169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01114 223 MobiDBLite consensus disorder prediction 1 40 - -
Cmo13g01114 223 Pfam TCP family transcription factor 54 140 IPR017887 -
Cmo13g01114 223 PANTHER TRANSCRIPTION FACTOR TCP17 13 130 - -
Cmo13g01114 223 ProSiteProfiles TCP domain profile. 54 112 IPR017887 -
Cmo13g01114 223 MobiDBLite consensus disorder prediction 15 32 - -
Cmo13g01114 223 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 130 IPR005333 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00214 Cmo13g01114 CCT
Cmo10g00314 Cmo13g01114 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01114 Cmo-Chr13:9110094 Cmo18g00457 Cmo-Chr18:3034490 8.67E-23 dispersed
Cmo01g00439 Cmo-Chr1:2133762 Cmo13g01114 Cmo-Chr13:9110094 3.68E-34 wgd
Cmo10g00314 Cmo-Chr10:1404121 Cmo13g01114 Cmo-Chr13:9110094 2.04E-40 wgd
Cmo11g00214 Cmo-Chr11:1068115 Cmo13g01114 Cmo-Chr13:9110094 3.65E-40 wgd
Cmo13g01114 Cmo-Chr13:9110094 Cmo14g01189 Cmo-Chr14:10009759 2.91E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10880 PF03634 TCP 6.20E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01114 - - cmax:111495302 436.417