Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01138 ATGTTTGGTTCAAGGAAGGCTCATTTGAGGATAGGGAAACATAGTTCTACCCCGAACCCTTTTGAGTCTGACGATGGTGTTAAAGCTAAGCAAAACCAGGTTTCTGCACAAAGGACTTCGTCAGACCCTTCATTAGTGACGGAGAATTTTGGCTCCAATCCTTTTGATGATCATCATGGACAGGCTCCCTCTTCTTCAGGTTCACTAACTTGGTCAGAAAGGAACAAGTACAAGAATGATTTCCGTGACTCGGGAGGAATAGAAAACCAATCAGTGCAGGAGCTGGAGAATTATGCTGTTTATAAGTCTGAGGAGACAACAAAAGCAGTGAATGGCTGTCTAAAGATTGCTGAAGAGATAAGGGATGATGCTACCCAAACTTTGGTTGCCTTGCATCAGCAGGGTGAGCAAATTAACAGGACTCATATGGTTGCTGCTGACATTGATTATGACCTCAGTCGGGGAGAGAAACTGCTGGGAAATCTAGGGGGAATGTTCTCCAAGACATGGAAGCCAAAGAAAACTCGACCAATATCAGGACCTGTTATAAGCTCAGAGGATTTAGTTAGAAGAAAGGGCAACCACATGGAGCAGAAGGAAAAGTTAGGATTGACACGTCATAAGGACCGGACCAATACAAAAGCTGCATATGCCGAACCTACCAGTGCAATTCAAAAAGTTGAGGTAGAAAAGGTGAAGCAAGATGATGCACTATCTGACATGAGCGATATCTTGGTAGAGCTGAAGGAAATGGCTGTTGACATGGGTTGTGAAATTGATAGGCAGAACCATGCTCTGGATCACGCTTCTGTTGATGTTGAGGTGATCGGTGACCGAGTTAAAGATGCTAACCGACGGGGTCGTCGTCTGCTCGGGAAATAG 882 44.78 MFGSRKAHLRIGKHSSTPNPFESDDGVKAKQNQVSAQRTSSDPSLVTENFGSNPFDDHHGQAPSSSGSLTWSERNKYKNDFRDSGGIENQSVQELENYAVYKSEETTKAVNGCLKIAEEIRDDATQTLVALHQQGEQINRTHMVAADIDYDLSRGEKLLGNLGGMFSKTWKPKKTRPISGPVISSEDLVRRKGNHMEQKEKLGLTRHKDRTNTKAAYAEPTSAIQKVEVEKVKQDDALSDMSDILVELKEMAVDMGCEIDRQNHALDHASVDVEVIGDRVKDANRRGRRLLGK 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9226740 9228909 + CmoCh13G011380.1 Cmo13g01138 395193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01138 293 MobiDBLite consensus disorder prediction 1 72 - -
Cmo13g01138 293 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 293 - -
Cmo13g01138 293 SUPERFAMILY SNARE fusion complex 229 291 - -
Cmo13g01138 293 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 290 IPR000727 -
Cmo13g01138 293 Gene3D - 86 164 - -
Cmo13g01138 293 CDD SNARE_SNAP25N_23N_29N_SEC9N 97 161 IPR044766 GO:0005484|GO:0031201
Cmo13g01138 293 SUPERFAMILY SNARE fusion complex 90 160 - -
Cmo13g01138 293 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 293 - -
Cmo13g01138 293 CDD SNARE_Qc 233 289 - -
Cmo13g01138 293 SMART tSNARE_6 223 290 IPR000727 -
Cmo13g01138 293 SMART tSNARE_6 95 162 IPR000727 -
Cmo13g01138 293 Gene3D - 225 292 - -
Cmo13g01138 293 MobiDBLite consensus disorder prediction 16 51 - -
Cmo13g01138 293 MobiDBLite consensus disorder prediction 58 72 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01138 K18211 SNAP25; synaptosomal-associated protein 25 - csv:101221282 525.783
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00232 Cmo13g01138 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00857 Cmo-Chr1:4552532 Cmo13g01138 Cmo-Chr13:9226740 0 wgd
Cmo11g00198 Cmo-Chr11:969638 Cmo13g01138 Cmo-Chr13:9226740 2.24E-97 wgd
Cmo13g01138 Cmo-Chr13:9226740 Cmo18g01136 Cmo-Chr18:11656051 6.62E-111 wgd
Cmo13g01138 Cmo-Chr13:9226740 Cmo04g01776 Cmo-Chr4:8950322 1.57E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g617 Blo04g00786 . . . . . . . Cmo13g01138 . . . Car10g00205 . . . Cpe04g01473 . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00867 . . Bma03g00844 . . Cmo10g00232 . Cma13g01086 . Car13g00924 . . Cpe18g00772 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001344 1 5 1 1 1 2 4 2 2 2 1 2 4 2 2 4 2 4 4 2 2 4 2 2 2 2 2 6 4 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo13g01138 Cmo_Chr13 FPKM 6.742647 7.397575 2.297534 3.102362 0.871895 1.014844 0.936807 0.56498 0.771342 0.721255