Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01141 ATGGGGTGTGTGAACTCGAAGCAGGCGGTGTCCGTGACGCCTGCATTCGATCACTCCGGCGCATTTCGTGACAATGAATCAACGGCGGTGGGGAGCTCGGGTCGTAGCCGATGTGGGTTGGGGGAGATTGAGAGGAGTTCGAAGGCGAAGACCAAGAGGAAGTCGAAGGGGTCCAGTGAGTTCTATGGGGTTGGGAGTGAGCTGGGTGAATCGGGGAGGGCGAGTTCAAATGGCGCAGGGAATCAGACTTTGAGCTTCAGATTGGGGAATTTGAACAAGTATATTGAAAGTGAGCAAGTGGCGGCAGGGTGGCCGGCCTGGCTCAGCGCTGTCGCCGGTGAGGCCATTCAAGGTTGGATTCCTCTCCGGTCCGATGCTTATGAGAAGCTGGAAAAGATTGGACAAGGTACGTATAGCAGTGTATTTCGAGCACGTGAACTAGAAACAGGAAGGATTGTTGCTTTAAAGAAGGTTCGGTTCGACAATTTTGAGCCTGAAAGTGTTAGATTTATGGCACGAGAGATCATGATTCTCCGCAGGCTTGATCACCCTAATATCATCAAATTGGAGGGCTTAATTACGTCTCGTTTATCATGTAACATTTACCTTGTGTTTGAGTACATGGACCACGACATTACTGGGCTCTTGTCCTCCCCTGATATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGATATCCGGGCTTGAGCATTGTCACTCACGCGGTGTAATGCATCGGGATATTAAAGGATCTAATCTCCTAGTCGATAACGAAGGGGTATTAAAGGTAGCTGATTTTGGATTGGCGAACTTCTATAATTCCGGGCACCAGCAACCTCTAACGAGTCGTGTTGTCACTCTGTGGTATCGTCCTCCTGAACTTCTACTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTCGCCGAACTCCTTGTTGGGAAACCTATTCTTCAGGGAAGAACAGAGGTCGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCTGATGAGTACTGGAAAAAGTCTAAACTTCCTCATGGCACTTTGTTCAAGCCACAACATCCATATAATAATTGCTTACGCCAGACATTCAAAGATTATCCTTCGACGACTGTGAACCTGCTAGAAACGCTTCTTTCCGTGGAACCATACAAGCGTGGAGTTGCCTCCTCTGCTCTTACATCTGCGTATTTCAGTACAAAACCGTATGCATGTGATCCATCAAGCTTGCCAATTTATCCACCTAGCAAAGAGATTGATGCAAAACAAAGAGAGGAGACGAAAAGGAAAAAACATAGTGGAAGAGCCCGTGGACTAGATAACAGAAGGTTAATGCGAAATCATCATGGAACCAATAAATTGGCACCAGCCGAGGACTCATCAGTCTCAGCTCGAGCTTTGCATACAATTAGTATTAATGCACAAGATCTAAAAGAAGAAAAGGTTACCAAAGCTGACCAGGCGCAAAAGCTGTCAATTGATAAACTGGAAGAGACTATACATGAAACGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCTCTACAAGTTTCGACATCGAGTGGCTTTGCGTGGGCAAGACGACGAAGAGACGATGCCTCTATTCGATGTTATTCCAGATCAATTTCACGAGGAGAACTAATTAATGGGCTGGACCATTCTGCTACATCAAGAAGCAATTTGGAGTCCAAGTTTCATGAAAAGGTAGACATGTTATCCATGAGCCGCTCAAGTTCCAAGGGTCCTGAATCAAGTGAGAGATCCAAGGTTGTGATAAGGAATCAGTGGGGCAAGTTTGAGCGTCCTGATTCCTTTGATACTTCGGATGAGTACCACTCCCAGGACTTTGCAGTGGCACTTTCTTTGCGAGATGAACTGGGAGCTAAGAGGAATAATCTGAGTTATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCCTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAGACAGACACGAGAGGCATATTCGACAGACAGTTCGAAGATCATGGTTTCAACGAGGTATTGTAACGCATGCTCTGATGATTTGGACCGGACTGGGGGAGGAACAGCGCCATCTGATGGCGCTGTTTAGAAAATTATTCTACCGGAAGCCTCCAGATCGGCTTCTCGAGATTGCGGAGAGAGTGTACGTGTTTGATTGTTGCTTCTCTACGGACGTCTTGGAAGAGGATGAGTACAAAGTATATTTGGGTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGATGCTTCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGAAAACTAAAACTTGGGACATACTGTCTCAATATGGTATGACAGTGATGGAATATCCTCTGCAATATGAAGGGTGTCCTCTACTGCCATTGGAGATGATCCACCACTTCATTCGGTCGAGTGAAAGCTGGTTTTCATTGGAGGGACAAAAAAATGTATTGTTGATGAACTGTGAACGAGGAGGATGGCCAATCCTTGCTTTCATGCTTTCAGCTCTCTTATTGTACTGTAAACAATATGAGGGGGAGCAGAAGACCCTTGAAATGGTCTACAGGCAAGCTCCTACAGAACTTCTCCATGTCCTTTCTCCAGTAAACTCACAGCCTTCTCAAATGAGATACCTTCACTATATTTCTAGGAGAAATCTAGGTTCTTATTGGCCTATACCTGATACACCTCTAATTTTAGACTGTCTGATACTTCGAGAGCTTCCTATGCTTGATGGAGGAAAAGGGTGTCGGCCTATCATACGCATTTATGGTCCGGACCCTTTAACACCAGGAAACCGAAGTCCAAAACTTTTTTTTTCCAGTGCAAAGATGGAAAGAAATGGTCTCCAGTATCTACAGGCAGCAAGCAGAGTTGTAAAAATGGATGTTCGTTGTCATGTTCAAGGCGATGTTGTTCTTGAATGCATCCATTTAGATGGAGATCTAATACACGAGGAAGTAATGTTTAGAGTTATGTTTCACACAGCCTTTGTGCATTCAAACAGTTTGAAGCTCAATCGTGATGAGGTTGATGTTTTATGGGATGCCAAGGAGCAGTTTCATAAAAATTTTAGAGTAGAGGTACATTTTCTGAATGCTGAACATATTGTGCCAAACCTCACCTCAGCAGCAAAAAGTGATGACAAAATCGAAATCGAAAGCAACTCGACTGAGGAGTTTTTCGAAGTGGAAGAAATATTTAGCAATTTTGTTGACGTGCAGGAAGTAATGAGGGATTATGATGTTCAAATGGTACATGCGAATGAAACGGATGCTATAGACAATCAAGCAGCGTTGAAGGAAGATGCAGACCCGCCTACATTCCAACGCTGTAAATCATTTGGAGGGAGTCATGACTTTGACAAGAAGATGGATTGTAACGTTGAAGCAGTGAAGGACATCACTGTTGATGATGTGACTTTCAAAACAGATGAAAAAATGGACTCTGGTCTTCATGCCGTGAAGGACATTGTTGTGAATTATGGAGATAACAAGCCAAATCCTTTACTATTTTCTGGTAATGTACTGAGACGTACAGGGATCAAGGAACTGATAGACGATGCTTATGACATGTTGGAAGGGGTGGAGCATAAAGGGTATGGAGAAGATACTGCTAATCCACACGTTGAGTTAAAGCTTCCTTCAAAAAAGATGGAAGCCGATGCGTGGAGGCTTAAACAGAAGCCCAAACAGCCTGAAAAAGGGGACTTTCTTGTAAAACAGGCAAAACCAAATACTCTTCCACCAGCTCTTCAGGCTAACACATCTTTCTTGCATGTATCATCTCCTAAAGTTTCTTTGTCACCCTCTTCATATTTTCATATAAATGCAAGATCTCCTCCTCCACCTCCACCACCACCACCTCCTCCACCTTCCAATCACTTGGCACCTAAAAGTTCATCATTAGTGTGTGGAAATACACCTAAGCATAGTGCTCCACCACCTCCACCTCCACCTCCCTTACCTAGAGCTCTACCACAATTATCTCCCATACGGCCACCGGCTTCACATGGAGCTCTGCTTTCTCCACGCCTAACAAATGCTAGAGCTCTGCCACCACCCCCTCCCCCACCTCCTCCAATTCAGAGGACAGCTTCTGCACATTTAACCCAAGGGCGACAGGCTTTAACATCTCCAACAACATGTGTTGTATCATCTTCCCTGCCATCTCCAATTTGTGAAGCACCATCACCTCCTCAACCTACTACTGGTCCTCTTCCACTGGTTCCTTCTTCCAGATCTCCAGGAGGTATGTCTCCACACCTAGGAGCTAAAGGAGTAAGTTCTTCAACTGATGTGAAAACACCATCTATAGTAATGAGGGGACGTGGGTTCTCGCGGAGCACAGGGGTGACTGCTAAAGTGCCTCAACGATCATCATTGAAACCTCTGCATTGGAGCAAGGTAACTCGGGTACCAAAAGGGAGCTTATGGGAAGAATTGCAAAGATGCGGAGATTCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACGCTTTTCTCTGTGACTGTCCCTAAACCTATTGCTGATTCAGGAGGTAAATCCGGAGGACGAAGAAAGTCAGTTGGATCAAAATTGGACAAAATTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATCATGCTAACAAAAGTTCGGATGCCACTGTCTGACATGATGGCAGCAGTGCTCTCCATGGATGAGTCAGTATTAGATGTAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACCAAAGAAGAGATGGAGCTTCTCAAGGGATACTCTGGTGACATGGATAAACTTGGCAAGTGCGAACAGATAGCAGAGTTCAAAAAAAGCCTAAACACTGTAAACTCTTTCTGTCAAGAGGTGAGGAGTTCTTGCAAATTGAAGGAGATATTGAAAAGAATTCTTTGCCTGGGAAATATGCTAAACCAAGGAACTGCTAGGGGTTCTGCAATTGGGTTCAGGTTGGATAGTCTCTCAAAACTCACTGATACACGTGCTTCTAACAATAAGTTGACTCTCATGCATTATCTGTGTAAGGTCGTTGCTTCAAAGTCACCATCACTTCTTGAATTTCATCTGGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATACAATTGAAATCTTTGGCAGAAGAAATGCAAGCAATAACAAAAGGATTGGAAAAGGTGAAGCAGGAACTAGTTGCTTCTGAAAGTGATGGCCCCATCTCTCAAACTTTTCGTAAGATATTGAAAGGATTTGTTAATCTTGCCGAGAAGGAGGTCGAATCTGTGACCGTTCTTTACTCGGTGGTGGGTAGAAATGCTGATGCACTTGCTCTATATTTTGGCGAGGATCCTTCCCGTTCTCCATTTGAACAAGTTACAGGAACTCTGTTCCATTTTACAAGATCCTTTCTGAAAGCACATGAAGAGAATAGCAAGCAGTTAGAAATGGAGATGAGAAAGCTGAGAAAATCTAACAATTAA 5523 44.14 MGCVNSKQAVSVTPAFDHSGAFRDNESTAVGSSGRSRCGLGEIERSSKAKTKRKSKGSSEFYGVGSELGESGRASSNGAGNQTLSFRLGNLNKYIESEQVAAGWPAWLSAVAGEAIQGWIPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCNIYLVFEYMDHDITGLLSSPDITFSESQIKCYMKQLISGLEHCHSRGVMHRDIKGSNLLVDNEGVLKVADFGLANFYNSGHQQPLTSRVVTLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHGTLFKPQHPYNNCLRQTFKDYPSTTVNLLETLLSVEPYKRGVASSALTSAYFSTKPYACDPSSLPIYPPSKEIDAKQREETKRKKHSGRARGLDNRRLMRNHHGTNKLAPAEDSSVSARALHTISINAQDLKEEKVTKADQAQKLSIDKLEETIHETNASQGDIPFSGPLQVSTSSGFAWARRRRDDASIRCYSRSISRGELINGLDHSATSRSNLESKFHEKVDMLSMSRSSSKGPESSERSKVVIRNQWGKFERPDSFDTSDEYHSQDFAVALSLRDELGAKRNNLSYQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQTVRRSWFQRGIVTHALMIWTGLGEEQRHLMALFRKLFYRKPPDRLLEIAERVYVFDCCFSTDVLEEDEYKVYLGSIIPKLQDHFPDASFMVFNFSERKRKTKTWDILSQYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWFSLEGQKNVLLMNCERGGWPILAFMLSALLLYCKQYEGEQKTLEMVYRQAPTELLHVLSPVNSQPSQMRYLHYISRRNLGSYWPIPDTPLILDCLILRELPMLDGGKGCRPIIRIYGPDPLTPGNRSPKLFFSSAKMERNGLQYLQAASRVVKMDVRCHVQGDVVLECIHLDGDLIHEEVMFRVMFHTAFVHSNSLKLNRDEVDVLWDAKEQFHKNFRVEVHFLNAEHIVPNLTSAAKSDDKIEIESNSTEEFFEVEEIFSNFVDVQEVMRDYDVQMVHANETDAIDNQAALKEDADPPTFQRCKSFGGSHDFDKKMDCNVEAVKDITVDDVTFKTDEKMDSGLHAVKDIVVNYGDNKPNPLLFSGNVLRRTGIKELIDDAYDMLEGVEHKGYGEDTANPHVELKLPSKKMEADAWRLKQKPKQPEKGDFLVKQAKPNTLPPALQANTSFLHVSSPKVSLSPSSYFHINARSPPPPPPPPPPPPSNHLAPKSSSLVCGNTPKHSAPPPPPPPPLPRALPQLSPIRPPASHGALLSPRLTNARALPPPPPPPPPIQRTASAHLTQGRQALTSPTTCVVSSSLPSPICEAPSPPQPTTGPLPLVPSSRSPGGMSPHLGAKGVSSSTDVKTPSIVMRGRGFSRSTGVTAKVPQRSSLKPLHWSKVTRVPKGSLWEELQRCGDSESAPEFDVSELETLFSVTVPKPIADSGGKSGGRRKSVGSKLDKIHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDVDQVENLIKFCPTKEEMELLKGYSGDMDKLGKCEQIAEFKKSLNTVNSFCQEVRSSCKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKLTLMHYLCKVVASKSPSLLEFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISQTFRKILKGFVNLAEKEVESVTVLYSVVGRNADALALYFGEDPSRSPFEQVTGTLFHFTRSFLKAHEENSKQLEMEMRKLRKSNN 1840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9242670 9259233 + CmoCh13G011410.1 Cmo13g01141 395196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01141 1840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Cmo13g01141 1840 Coils Coil 1818 1838 - -
Cmo13g01141 1840 MobiDBLite consensus disorder prediction 1381 1408 - -
Cmo13g01141 1840 MobiDBLite consensus disorder prediction 1326 1346 - -
Cmo13g01141 1840 SUPERFAMILY Protein kinase-like (PK-like) 121 417 IPR011009 -
Cmo13g01141 1840 Pfam Protein kinase domain 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01141 1840 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 912 1047 IPR035892 -
Cmo13g01141 1840 SMART PTEN_C2_2 909 1049 IPR014020 -
Cmo13g01141 1840 MobiDBLite consensus disorder prediction 1365 1380 - -
Cmo13g01141 1840 SMART serkin_6 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01141 1840 MobiDBLite consensus disorder prediction 1288 1449 - -
Cmo13g01141 1840 SMART it6_source 1466 1839 IPR015425 -
Cmo13g01141 1840 Coils Coil 1724 1744 - -
Cmo13g01141 1840 MobiDBLite consensus disorder prediction 1409 1425 - -
Cmo13g01141 1840 MobiDBLite consensus disorder prediction 41 57 - -
Cmo13g01141 1840 Pfam C2 domain of PTEN tumour-suppressor protein 910 1047 IPR014020 -
Cmo13g01141 1840 Gene3D - 914 1048 - -
Cmo13g01141 1840 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1468 1840 IPR015425 -
Cmo13g01141 1840 Gene3D Formin, FH2 domain 1621 1840 IPR042201 -
Cmo13g01141 1840 PANTHER FORMIN-J 712 1838 - -
Cmo13g01141 1840 MobiDBLite consensus disorder prediction 432 473 - -
Cmo13g01141 1840 ProSitePatterns Protein kinases ATP-binding region signature. 133 156 IPR017441 GO:0005524
Cmo13g01141 1840 ProSiteProfiles C2 tensin-type domain profile. 911 1050 IPR014020 -
Cmo13g01141 1840 Pfam Formin Homology 2 Domain 1620 1817 IPR015425 -
Cmo13g01141 1840 Pfam Formin Homology 2 Domain 1473 1621 IPR015425 -
Cmo13g01141 1840 CDD STKc_CDK9_like 127 411 - -
Cmo13g01141 1840 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1369 1837 - -
Cmo13g01141 1840 Gene3D Protein tyrosine phosphatase superfamily 721 910 IPR029021 -
Cmo13g01141 1840 MobiDBLite consensus disorder prediction 21 60 - -
Cmo13g01141 1840 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo13g01141 1840 Gene3D Phosphorylase Kinase; domain 1 114 209 - -
Cmo13g01141 1840 MobiDBLite consensus disorder prediction 1293 1312 - -
Cmo13g01141 1840 Gene3D Formin, FH2 domain 1466 1620 IPR042201 -
Cmo13g01141 1840 Gene3D Transferase(Phosphotransferase) domain 1 210 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00848 Cmo-Chr1:4506386 Cmo13g01141 Cmo-Chr13:9242670 0 dispersed
Cmo04g02916 Cmo-Chr4:20692719 Cmo13g01141 Cmo-Chr13:9242670 0 dispersed
Cmo10g00227 Cmo-Chr10:985213 Cmo13g01141 Cmo-Chr13:9242670 0 dispersed
Cmo11g00188 Cmo-Chr11:920830 Cmo13g01141 Cmo-Chr13:9242670 9.16E-09 dispersed
Cmo11g00189 Cmo-Chr11:923749 Cmo13g01141 Cmo-Chr13:9242670 9.72E-21 dispersed
Cmo11g00464 Cmo-Chr11:2265801 Cmo13g01141 Cmo-Chr13:9242670 3.54E-138 dispersed
Cmo13g01141 Cmo-Chr13:9242670 Cmo15g00259 Cmo-Chr15:1251813 0 dispersed
Cmo01g00847 Cmo-Chr1:4495760 Cmo13g01141 Cmo-Chr13:9242670 0 wgd
Cmo11g00187 Cmo-Chr11:912910 Cmo13g01141 Cmo-Chr13:9242670 2.95E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74807 PF00069 Pkinase 2.00E-68 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01141 - - csv:101221127 1549.26