Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01146 ATGGAGTTCGGGACTGGAGGCGGCGGCGGCTCCGGTTGGGATAACGATTCCTCCTCCGACCCACAACGCCGGAAGAAATGCTACCATCGTCACACTGCCAATCAGATTCAGAGGCTCGAGGCAATGTTCAAAGAATGCCCACACCCAGATGAGAAACAGAGATTACAGTTAAGCAGAGAACTGGGATTGGCTCCTCGCCAAATCAAATTTTGGTTCCAGAATCGGAGGACCCAGATGAAGGCTCAACATGAAAGGGCAGACAATAGTGCACTTCGGGCAGAGAACGACAAGATTCGATGCGAGAACATAGCCATCAGAGAGGCCCTCAAGAATGTCATCTGCCCCTCCTGCGGTGGCCCTCCCCTTCAGGACCCTTACTTCGACGAACACAAACTACGAATCGAAAACGCCCATTTGAAGGAAGAGCTTGATAGAGTATCTAGCATTGCGGCCAAGTTCATCGGGAGGCCAATCTCTCAGCTCCCACCCATTCACCCACCTCATTTTTCGTCATTAGAGCTATCCATGGCTAGTTTTCCCTCCCAAGAAATTGGCTGCCCTTCTCTTGATCTTGATTTACTTCCTGCAAGTTCTACAAGTGTTCCCACTTTGCCATACCACCACCCAATTCACCTCTCCGCCGTGGATAAGTCCCTCATGACTGAAATTGCCACAAATGCCATGGCAGAGTTGCTCAGGCTTTCCCAAACTAATGAGCCATTCTGGATCAAATCAACAAATGATGGACGCGACGTTCTCGACCTCGAAACCTATGAACAGGCTTTTCCAAGACCCAACTCTCCCTTCAAGAATCCCCATTTTCGCACCGAAGCAACTAGAGATTCAGGTGTCGTGATCATGAATAGTGAAGCATTGGTTGATATGTTTATGGACTCGAACAAATGGACAGAATTATTTCCCACAATTGTGTCGATTGCAAGAACAATCGAAGTTATATCGTCTGGATTGTTGGGAACTCAGAATGGCTCGTTGCAACTGATGTACCAAGAACTGCAGCTACTCTCCCCATTGGTTTCGACTCGTCATTTTTACATCCTCAGATTTTGTCAACAAATCGAGCACGGCACGTGGGCCGTGGTTGATGTTTCCTACAACATCCCCAGAGAAAATCAAATAGTTTCTCATTCTCAATGTCACCGCCTTCCCTCTGGCTGCTTGATCCAGGACATGCCTAACGGTTACTCCAAGGTTACTTGGATTGAGCATGTGGAGGTGGAAGATAGAGGCTCCACTAATTGGCTTTGTAGAGATCTTATTCATAGTGGATTAGCCTTTGGTGCTGAACGTTGGGTTGCAACTCTTCAGCGGATGTCTGAAAGGCTTGCCTGTTTAATGATGACTGGTAGTTCCAGTCAGGATCTCGGCGGAGTAATTCCTTCATCAGAAGGGAAAAGAAGCATGATGAAACTAGCACAACGAATGGTGAACAATTTCTGTGCCAGTATCAGCTCATCTCATGGCCACCGTTGGACCACCCTTTCTGGGATGAATGAGGTTGGTGTTCGTGTCACGGTGCATAAAAGCATGGATCCTGGCCAGCCGAACGGCGTGGTTCTTAGTGCAGCTACAACCATATGGCTCTCAGTATCTCCTCAAACCATCTTTAACTTCTTTAAGAACGACAGAACCAGATCCCAGTGGGATGTTCTGTCGGATGGCAACCCGGTCCAGGAGGTTGCTCATATAACCAACGGATCCCATCCAGGGAATGCCATATCTGTTCTCAGAGCTTTCAATACAAGTCAGAATAACATGTTGATACTCCAAGAGAGTTGCATAGACTCATCAGGGTCACTTGTTGTGTACTGCCCTGTGGATCTACCAGCCATGAATGTTGTAATGAGTGGGGAGGACCCATCAAGTATTCCCTTACTACCTTCAGGATTCACAATTCTACCAGACGGTCGACGGGACCAAGGAGAGGGCACATCGAGCAGCCTCGACGTCCACAGCAGGTCAGGTGGCTCACTGTTGACCGTGGCGTTTCAGATACTCGTAAGCAGCTTGCCATCAGGAAAGCTGAACTTAGAGTCAGTAACAACGGTTAATAACCTTATCAGCACCACCCTCCACCAGATCAAAACAGCCTTAAATTGTCATAGTTCCTGA 2130 48.08 MEFGTGGGGGSGWDNDSSSDPQRRKKCYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLQDPYFDEHKLRIENAHLKEELDRVSSIAAKFIGRPISQLPPIHPPHFSSLELSMASFPSQEIGCPSLDLDLLPASSTSVPTLPYHHPIHLSAVDKSLMTEIATNAMAELLRLSQTNEPFWIKSTNDGRDVLDLETYEQAFPRPNSPFKNPHFRTEATRDSGVVIMNSEALVDMFMDSNKWTELFPTIVSIARTIEVISSGLLGTQNGSLQLMYQELQLLSPLVSTRHFYILRFCQQIEHGTWAVVDVSYNIPRENQIVSHSQCHRLPSGCLIQDMPNGYSKVTWIEHVEVEDRGSTNWLCRDLIHSGLAFGAERWVATLQRMSERLACLMMTGSSSQDLGGVIPSSEGKRSMMKLAQRMVNNFCASISSSHGHRWTTLSGMNEVGVRVTVHKSMDPGQPNGVVLSAATTIWLSVSPQTIFNFFKNDRTRSQWDVLSDGNPVQEVAHITNGSHPGNAISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAMNVVMSGEDPSSIPLLPSGFTILPDGRRDQGEGTSSSLDVHSRSGGSLLTVAFQILVSSLPSGKLNLESVTTVNNLISTTLHQIKTALNCHSS 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9265340 9268309 - CmoCh13G011460.1 Cmo13g01146 395201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01146 709 ProSiteProfiles START domain profile. 213 450 IPR002913 GO:0008289
Cmo13g01146 709 SUPERFAMILY Bet v1-like 469 701 - -
Cmo13g01146 709 SMART START_1 222 447 IPR002913 GO:0008289
Cmo13g01146 709 MobiDBLite consensus disorder prediction 1 28 - -
Cmo13g01146 709 SUPERFAMILY Homeodomain-like 9 82 IPR009057 -
Cmo13g01146 709 SMART HOX_1 24 86 IPR001356 GO:0003677
Cmo13g01146 709 Gene3D - 220 448 IPR023393 -
Cmo13g01146 709 CDD START_ArGLABRA2_like 217 446 - -
Cmo13g01146 709 Pfam Homeodomain 28 80 IPR001356 GO:0003677
Cmo13g01146 709 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 4 707 - -
Cmo13g01146 709 SUPERFAMILY Bet v1-like 216 448 - -
Cmo13g01146 709 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Cmo13g01146 709 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Cmo13g01146 709 Gene3D - 13 98 - -
Cmo13g01146 709 Pfam START domain 223 446 IPR002913 GO:0008289
Cmo13g01146 709 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 707 IPR042160 -
Cmo13g01146 709 CDD homeodomain 25 83 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01673 Cmo-Chr2:9599233 Cmo13g01146 Cmo-Chr13:9265340 0 dispersed
Cmo13g01146 Cmo-Chr13:9265340 Cmo08g00893 Cmo-Chr8:5801325 0 dispersed
Cmo14g00882 Cmo-Chr14:4675827 Cmo13g01146 Cmo-Chr13:9265340 0 transposed
Cmo01g00790 Cmo-Chr1:4159023 Cmo13g01146 Cmo-Chr13:9265340 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10882 PF01852 START 8.40E-45 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01146 K09338 - csv:101215660 1296.18