Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01147 ATGGTAAATTTCCATGTAAACGAGAATCAGACATTCTCTAATCCTATGCCTAGATACTTAGAAATGGCTTCCTTTGAAAAAGACGATACACCGATGCTATCAGACACTGGTCCACCATTGTTAGATGAACAACTGGGTTCTTATTTTCCTTCGTATGCATCATTGGCCCGGAGTTCATCGCTATCAATTCCAACTTCTTCTGGGATATATGTCAGTGATGCAAAGCTTGTTGGTTATACTGGTCCCTTACGAATTGAAAGAAAAAGTCCATTCCTAGAGAGTGGTTCAAAATATACTCTCCGTAAACCTGAAAAATCTTCACAGTCAAGTCCAGGTGTGACTGAAAGCAAAACTGCAGAGCCATTGACAGGCAAATTTCCTTCTTTCAAGACGAATGACGCGTCTGATTGGGCCATTCAACACTATGCTGGCAGAAATGAACACTTAATAAAGTCTGGCCAGCTGGGAGTGTGCAATGATCCTTTCTGTATAACATGCCCAACATATAATTCCAAAGCATCGCAACAGAAAAGCTCAAGAATGAGAGGCATATTTGACCCTGAGTTTCACAAGGATCTCTACGGAGAAGGGAAAGGTTGGGCAGTGAAGTTTCGGTCTGTCTGGTGCTTCTTGCTTCCGTATATTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTTCAGCAATGGAACAAGTTTTTTGTTATTTCTTGCTTACTGGCGATCTTCTTGGACCCGTTATTTTTCTTCGTGCTTGCTGTCCACTTTGTTAAGAAGTGTATATTTATTAATTGGCCGATGACCACAACATTGGTGGTTTTCCGAAGCATGACCGATTTTGTCTATTTCCTACACATGCTTCTCCAGTTTAGGTTGGCTTACGTGGCACCAGAAACCAGAGTTGTTGGAGCAGGCGAATTAGTTGACCATCCGAAGAAAATTGCTAAGAACTACCTTAAAGGAAATTTTTTTATAGATGTGCTTGTTGTTTTACCGCTGCCTCAGATAATAGTTTTTCTAATCCTGCCAAACTCTTTGGGGACATCTGGAGCAAATCATGCAAAAAATCTGTTACGCACTGCAGTTATGGCTCAATATATTCCCAGACTGTACAGGTTTCTACCTCTTCTTGCTGGTCAGTCTCCAAGTGGCTTTGTTTTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTCTCACCTTTATGTTGGCTGGTCATATTGTTGGGTCTCTCTGGTATCTCTTTGGGCTTCAGGGGGTGAATCGATGTTTTCGGGATGCCTGCAATCGCACTGGAAGTACGTTCTGCTTAGAATATATAGATTGTGGGCATGGGGACGAAGCTGGATATGACATTCAGGATTTACGGCGAGATCAGTGGAAAAGTAATGAGAATGCTACGGCATGTTTTGCTAAAGAAGGTTTTGATTATGGAATCTACCTTCAGGCTGTAAATCTTACTACAGAAAGCAATTTACTCACGAGATATACTTACTCATTGTTTTGGGGATTCCAGCAAATCAGTACTCTGGCCGGAAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTCACTATGGGTATTATTGGGCTTGGTCTATTGCTGTTTGCTCTTCTCATCGGGAATATGCAGATTTTTCTTCAGGCTCTAGGAAGAAGGAGGTTAGAAATGTCATTAAGACGCCGTGATGTTGAGCAGTGGATGGAGCATCGTCGCTTGCCAGAGAGTTTAAGAAGGAAAGTACGACAGGCTGAAAGGTACAATTGGGCTTCTACAAGAGGCGTAAATGAAGAGAGGATTTTCGAAAATCTGCCTGAGGACCTACAAAGAAACATAAGACGACATCTCTTTAGATTTGTCAACAAGGTGCGCATTTTTGCACTGATGAACTATGAACCTATTTTAGATGCAATACGTGAGAGACTGCGACAAAGGACATACATAGAAGGAAGTGAAGTTTTTACTGCTGGAGATATCATTGAGAAGATGGTTTTCATTGTACGGGGGAAAATGGAGAGCCGTGTAGATGGGAACGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGCGAGGAACTTCTAACATGGTGTCTTGAGCATTCCTCCATAAACAGAGATATGAAGCGACATCAAATTCCAGCACAAAAATTGGTCAGCAACCGGACAGTAAAATGCTCGACGAATGTTGAAGCATTTTCTCTCCGGGCTGCAGACCTTGAAGAAGTGACCAGTATGTTTTCTAGATTCCTGCGAAACCCACGTGTTCAAGGAGCCATAAGGTATGAATCACCCTACTGGAGGTTCCTCGCAGCAACGCGTATTCAAGTAGCTTGGAGGTACAGGAAAAGGCGTCTATATCGAGCTCAAACCTCCCACTCTAACTACTAA 2391 42.41 MVNFHVNENQTFSNPMPRYLEMASFEKDDTPMLSDTGPPLLDEQLGSYFPSYASLARSSSLSIPTSSGIYVSDAKLVGYTGPLRIERKSPFLESGSKYTLRKPEKSSQSSPGVTESKTAEPLTGKFPSFKTNDASDWAIQHYAGRNEHLIKSGQLGVCNDPFCITCPTYNSKASQQKSSRMRGIFDPEFHKDLYGEGKGWAVKFRSVWCFLLPYIPGVMNPHAKVVQQWNKFFVISCLLAIFLDPLFFFVLAVHFVKKCIFINWPMTTTLVVFRSMTDFVYFLHMLLQFRLAYVAPETRVVGAGELVDHPKKIAKNYLKGNFFIDVLVVLPLPQIIVFLILPNSLGTSGANHAKNLLRTAVMAQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHIVGSLWYLFGLQGVNRCFRDACNRTGSTFCLEYIDCGHGDEAGYDIQDLRRDQWKSNENATACFAKEGFDYGIYLQAVNLTTESNLLTRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMGIIGLGLLLFALLIGNMQIFLQALGRRRLEMSLRRRDVEQWMEHRRLPESLRRKVRQAERYNWASTRGVNEERIFENLPEDLQRNIRRHLFRFVNKVRIFALMNYEPILDAIRERLRQRTYIEGSEVFTAGDIIEKMVFIVRGKMESRVDGNGIVVPLSEGDVCGEELLTWCLEHSSINRDMKRHQIPAQKLVSNRTVKCSTNVEAFSLRAADLEEVTSMFSRFLRNPRVQGAIRYESPYWRFLAATRIQVAWRYRKRRLYRAQTSHSNY 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9272262 9285659 - CmoCh13G011470.1 Cmo13g01147 395202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01147 796 Pfam Ion transport protein 229 547 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo13g01147 796 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 27 791 - -
Cmo13g01147 796 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 27 791 - -
Cmo13g01147 796 SUPERFAMILY cAMP-binding domain-like 553 751 IPR018490 -
Cmo13g01147 796 Gene3D Helix hairpin bin 553 617 - -
Cmo13g01147 796 MobiDBLite consensus disorder prediction 96 126 - -
Cmo13g01147 796 SUPERFAMILY Voltage-gated potassium channels 224 554 - -
Cmo13g01147 796 Gene3D Jelly Rolls 623 749 IPR014710 -
Cmo13g01147 796 CDD CAP_ED 625 743 IPR000595 -
Cmo13g01147 796 Gene3D - 233 549 - -
Cmo13g01147 796 MobiDBLite consensus disorder prediction 101 117 - -
Cmo13g01147 796 ProSiteProfiles cAMP/cGMP binding motif profile. 638 695 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01147 Cmo-Chr13:9272262 Cmo01g01626 Cmo-Chr1:12370950 2.39E-137 dispersed
Cmo13g01147 Cmo-Chr13:9272262 Cmo02g01137 Cmo-Chr2:6889071 8.21E-140 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01147 K05391 - csv:101215903 1293.49