Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01159 ATGGGGAGGAAGAAGAAAACTGACGGTGGTGGTGAAAGTTCTGAGTCTCAGGATGTTGGTGGCCGTGGCTCCCAACGATCAGCTGAAAGGAGAGATGGTCCACAGCAACACGGTGGCAGTGGATATCATGGTGGAAGAGGTTGGGCTTCTCAAGGGGGACGGGGAAGTCAAGGTGGTGGTCGTGGCCGAGGAACATCTCAACATCAGCACTACGGAGGACCTCCGGATTACCAAGGCAGGGGTAGAGGTGTGCCATATCAGCATGGAGGACGCGGTAACTATGGTGGTAATCGCAGTGGCATGGGTGGTGGCGGCATTGGGGGAGGATCTTCTTCTGGTGGACCATCCAGGCAACCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTATCAAGGTGGGGTGACTCAGCCAATGTCATCTCTGGCGAGTTCTTCCTCCCACCCACCCGATACTTCATCAATTGATCAACAATTTCAACAAATTTCCATCCAGCAGGAATCTTCTCAAAGCCAAGCAATTCAACCTGCACCACCATCTAGTAAATCTATGAGATTCCCTTTGAGACCAGGAATGGGTAGCTCTGGCATAAGGTGTATTGTTAAGGCTAACCACTTCTTTGCTGAGCTGCCGGACAAAGATCTTCATCAGTATGATGTTACTATTACTCCAGAAGTCACTTCACGTGTCTATAATCGAGCTGTAATGCAACAGCTAGTGAACTTATACAGGGTCTCTCACCTTGGTAATCGTCTTCCAGCCTATGATGGAAGAAAAAGTTTATACACAGCTGGTCCTCTTCCGTTCATATCAAATGAGTTTAGAATCACTCTTTTTGATGAAGAGGATGGATCAGGAGGACAAAGACGGGAAAGAGAATTTAAAGTTGTGATCAAATTGGCTGCTCGTGCTGATTTGCACCATTTAGGGCTCTTTCTGCAGGGCAGACAGGCGGATGCCCCACAGGAAGCCCTTCAAGTTCTGGATATTGTATTGCGCGAATTGCCTACTTCAAGGTATTGTCCAGTGGGCCGATCATTTTATTCTCCTGACCTTGGCAGACGTCAGACAATGGGTGAGGGGCTGGAAAGCTGGCGGGGCTTTTATCAGAGTATCCGGCCTACTCAAATGGGCCTCTCTCTAAATATTGATATGTCATCTACTGCTTTCATAGAACCTTTGCCTGTCATTGATTTTGTGACTCAGCTTCTCAACCGTGATGTGTCATCGAGACCATTATCTGACGCTGACCGTGTGAAGATAAAGAAGGCTCTTCGAGGTGTTAAAGTTGAAGTGACACACCGTGGTAATATGCGCAGAAAATATCGCATAACTGGTTTGACATCACAAGCAACAAGAGAGCTAACTTTCCCGGTTGATGAAAGAGGTACTATGAAATCAGTGGTCGAGTACTTCTATGAAACATATGGGTTTGTTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAGCAGAGACCTAACTATCTACCCATGGAAGTTTGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAGATAACTGCTCTGCTCAAGGTTACATGCCAACGACCAAAAGATAGAGAGGAAGACATTATGCGGACGGTACGTCATAATGCATATCATGACGATCCATATGCAAGGGAGTTTGGAATTAAGATAAGTGCTAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCTGCACCATGGCTAAAATATCATGAGACCGGCAGAGAAAAGGATTGCTTGCCACAGGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATGTGCATAAATTTCTCTCGATATGTGCAAGACAGTGTTACTCGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGATTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTTTTGCCAGATAACAACGGATCTCTTTATGGTGATTTAAAACGAATCTGTGAAACGGATCTTGGCCTCGTTTCCCAGTGCTGTTTGACTAAACATGTCTTCAAAATGAGTAAACAGTATTTGGCCAATGTGGCCTTGAAAATAAACGTAAAGGTTGGGGGAAGAAATACAGTACTTGTTGATGCATTATCTAGGCGCATACCCTTGGTTAGTGACCGCCCTACCATTATATTTGGTGCCGATGTAACTCATCCTCACCCAGGAGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCTGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTAAGGGGGACTGTAACGGGTGGAATGGTCAAGGAACTCCTCATCTCCTTCCGTAGAGCCACTGGACAGAAACCTCAGCGCATTATATTTTACAGGGATGGGGTTAGCGAAGGACAGTTTTACCAAGTTTTATTGCATGAGCTGGATGCCATTCGAAAGGCATGCGCTTCTCTAGAACCAAACTACCAACCTCCAGTGACTTTCGTTGTTGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCAACGCTGTTGACAAGAGTGGGAACATATTGCCTGGTACGGTAGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTTTACCTGTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCAGCTCACTACCATGTTCTGTGGGATGAGAACAAGTTCACAGCTGACAGATTGCAGACTCTAACCAATAATCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCTATTGTGCCCCCAGCCTACTACGCTCATCTTGCTGCATTCCGAGCTCGTTTCTATATGGAACCCGAGACTTCTGATAGCGGGTCAATTAGCAGTGATGCTGCTGCTGGACGTGGTGGTGGTGCTCGCAGCACACGGGCACCAGGGTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTCAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA 3165 46.0 MGRKKKTDGGGESSESQDVGGRGSQRSAERRDGPQQHGGSGYHGGRGWASQGGRGSQGGGRGRGTSQHQHYGGPPDYQGRGRGVPYQHGGRGNYGGNRSGMGGGGIGGGSSSGGPSRQPVPELHQATPVYQGGVTQPMSSLASSSSHPPDTSSIDQQFQQISIQQESSQSQAIQPAPPSSKSMRFPLRPGMGSSGIRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMQQLVNLYRVSHLGNRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVGRSFYSPDLGRRQTMGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRITGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMRTVRHNAYHDDPYAREFGIKISAKLASVEARILPAPWLKYHETGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVIPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMVKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRNAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADRLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSDAAAGRGGGARSTRAPGLNAAVRPLPALKENVKRVMFYC 1054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9330678 9336812 - CmoCh13G011590.1 Cmo13g01159 395214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01159 1054 MobiDBLite consensus disorder prediction 1006 1030 - -
Cmo13g01159 1054 Pfam Argonaute linker 1 domain 341 391 IPR014811 -
Cmo13g01159 1054 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 84 1053 - -
Cmo13g01159 1054 SMART PAZ_2_a_3 397 529 IPR003100 GO:0005515
Cmo13g01159 1054 ProSiteProfiles PAZ domain profile. 393 507 IPR003100 GO:0005515
Cmo13g01159 1054 ProSiteProfiles Piwi domain profile. 683 1004 IPR003165 GO:0003676
Cmo13g01159 1054 Pfam Glycine-rich region of argonaut 72 178 IPR024357 -
Cmo13g01159 1054 Gene3D paz domain 386 511 - -
Cmo13g01159 1054 MobiDBLite consensus disorder prediction 129 178 - -
Cmo13g01159 1054 MobiDBLite consensus disorder prediction 1 188 - -
Cmo13g01159 1054 PANTHER PROTEIN ARGONAUTE 1A 84 1053 - -
Cmo13g01159 1054 SUPERFAMILY PAZ domain 200 543 IPR036085 GO:0005515
Cmo13g01159 1054 SMART DUF1785_2 340 392 IPR014811 -
Cmo13g01159 1054 Pfam Piwi domain 684 1003 IPR003165 GO:0003676
Cmo13g01159 1054 Gene3D - 752 1054 IPR036397 GO:0003676
Cmo13g01159 1054 Pfam Argonaute linker 2 domain 533 579 IPR032472 -
Cmo13g01159 1054 Gene3D - 571 746 - -
Cmo13g01159 1054 SUPERFAMILY Ribonuclease H-like 678 1004 IPR012337 -
Cmo13g01159 1054 SMART Piwi_a_2 683 1004 IPR003165 GO:0003676
Cmo13g01159 1054 CDD PAZ_argonaute_like 392 506 - -
Cmo13g01159 1054 Pfam PAZ domain 397 522 IPR003100 GO:0005515
Cmo13g01159 1054 Pfam Mid domain of argonaute 590 665 IPR032473 -
Cmo13g01159 1054 Pfam N-terminal domain of argonaute 198 331 IPR032474 -
Cmo13g01159 1054 CDD Piwi_ago-like 551 1003 IPR045246 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01375 Cmo-Chr6:10120956 Cmo13g01159 Cmo-Chr13:9330678 0 dispersed
Cmo11g00584 Cmo-Chr11:2816968 Cmo13g01159 Cmo-Chr13:9330678 0 dispersed
Cmo13g01159 Cmo-Chr13:9330678 Cmo14g01794 Cmo-Chr14:13773102 0 dispersed
Cmo01g00803 Cmo-Chr1:4221278 Cmo13g01159 Cmo-Chr13:9330678 0 wgd
Cmo13g01159 Cmo-Chr13:9330678 Cmo18g01146 Cmo-Chr18:11720096 0 wgd
Cmo13g01159 Cmo-Chr13:9330678 Cmo04g01762 Cmo-Chr4:8894242 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01159 K11593 - csv:101212130 1875.91