Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo13g01161 | ATGGGCGCCACCCAACTCTTTGTTCTGTCTCTTATTTCCCTCACTCTCCTCTCCGCAGTTTCTTATTCAGAAGGCAATGGGTTGAAGATGAACGCCATTGACAGATGCTGGAGATCGAACCCTTACTGGAGGAGAAACAGGCAACAACTGGGCGTTTGCTCGGTGGGTTTCGTTGGAAAAATGACCAACAACATCGGAAGAAATCTCATACGCTACCAAGTCACCGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACACTCCGATACGGCGCCACAATGATCAAATCCAAAGTCTGGATCACCTTCCAAAAAGACATGCACATCCTGCTCCACAAGCCGCTTCTCATAAGCAGCTACACAGCCATCGACGGGCGAGGGGCCAGCGTCCACATCTCCGGGAATGCATGCCTGGTGGTCTCCAAGGCCACCAACATCATAATCCACGGCCTTATCATCCACCACTGCAAGGCTCAGGGCGCAGGCCAAGTCATGGGCCCTAATTCCAAGTTGGTTTCGCTTGGACACGTGGACGGCGATGCCATTCGTTTAGTATCAGCATCCAAAGTCTGGATTGACCACAACACACTGTACCGCTGCGAGGATGGGCTGCTCGACGTCACCAGAGGCTCCACTGACATCACCATTTCCAACAATTGGTTCCGCGACCAAGACAAGGTTATTCTTCTCGGCCACGAGGACGGCTATGTCCGAGACAAGAACATGAGAGTCACTGTCGTCTATAACCATTTTGGACCCAACTGCAACCAAAGGATGCCGAGGATCCGACATGGGTATGCGCACGTGGCGAACAATTTGTACCAAGGATGGACGCAATACGCAATTGGAGGGAGCATGAATCCAAGCGTCAAGAGTGAAGCCAACCTGTTCATCGCATCAAAATCAAAACAGGCAATAATGACATAA | 930 | 51.51 | MGATQLFVLSLISLTLLSAVSYSEGNGLKMNAIDRCWRSNPYWRRNRQQLGVCSVGFVGKMTNNIGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKSKVWITFQKDMHILLHKPLLISSYTAIDGRGASVHISGNACLVVSKATNIIIHGLIIHHCKAQGAGQVMGPNSKLVSLGHVDGDAIRLVSASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHEDGYVRDKNMRVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQAIMT | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 9340364 | 9341401 | + | CmoCh13G011610.1 | Cmo13g01161 | 395216 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo13g01161 | 309 | Pfam | Pectate lyase | 120 | 298 | IPR002022 | - | |
Cmo13g01161 | 309 | PANTHER | PECTATE LYASE | 17 | 301 | - | - | |
Cmo13g01161 | 309 | PANTHER | PECTATE LYASE 18-RELATED | 17 | 301 | IPR045032 | GO:0030570 | |
Cmo13g01161 | 309 | PRINTS | Pollen allergen Amb family signature | 281 | 300 | IPR018082 | - | |
Cmo13g01161 | 309 | PRINTS | Pollen allergen Amb family signature | 259 | 278 | IPR018082 | - | |
Cmo13g01161 | 309 | PRINTS | Pollen allergen Amb family signature | 179 | 200 | IPR018082 | - | |
Cmo13g01161 | 309 | PRINTS | Pollen allergen Amb family signature | 78 | 103 | IPR018082 | - | |
Cmo13g01161 | 309 | PRINTS | Pollen allergen Amb family signature | 115 | 131 | IPR018082 | - | |
Cmo13g01161 | 309 | Gene3D | - | 30 | 308 | IPR012334 | - | |
Cmo13g01161 | 309 | SMART | amb_all | 107 | 304 | IPR002022 | - | |
Cmo13g01161 | 309 | SUPERFAMILY | Pectin lyase-like | 30 | 302 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo13g01161 | Cmo-Chr13:9340364 | Cmo13g00799 | Cmo-Chr13:7568287 | 7.89E-91 | dispersed | |
Cmo01g00805 | Cmo-Chr1:4233678 | Cmo13g01161 | Cmo-Chr13:9340364 | 1.41E-139 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo13g01161 | K01728 | - | csv:101217103 | 531.561 |