Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01161 ATGGGCGCCACCCAACTCTTTGTTCTGTCTCTTATTTCCCTCACTCTCCTCTCCGCAGTTTCTTATTCAGAAGGCAATGGGTTGAAGATGAACGCCATTGACAGATGCTGGAGATCGAACCCTTACTGGAGGAGAAACAGGCAACAACTGGGCGTTTGCTCGGTGGGTTTCGTTGGAAAAATGACCAACAACATCGGAAGAAATCTCATACGCTACCAAGTCACCGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACACTCCGATACGGCGCCACAATGATCAAATCCAAAGTCTGGATCACCTTCCAAAAAGACATGCACATCCTGCTCCACAAGCCGCTTCTCATAAGCAGCTACACAGCCATCGACGGGCGAGGGGCCAGCGTCCACATCTCCGGGAATGCATGCCTGGTGGTCTCCAAGGCCACCAACATCATAATCCACGGCCTTATCATCCACCACTGCAAGGCTCAGGGCGCAGGCCAAGTCATGGGCCCTAATTCCAAGTTGGTTTCGCTTGGACACGTGGACGGCGATGCCATTCGTTTAGTATCAGCATCCAAAGTCTGGATTGACCACAACACACTGTACCGCTGCGAGGATGGGCTGCTCGACGTCACCAGAGGCTCCACTGACATCACCATTTCCAACAATTGGTTCCGCGACCAAGACAAGGTTATTCTTCTCGGCCACGAGGACGGCTATGTCCGAGACAAGAACATGAGAGTCACTGTCGTCTATAACCATTTTGGACCCAACTGCAACCAAAGGATGCCGAGGATCCGACATGGGTATGCGCACGTGGCGAACAATTTGTACCAAGGATGGACGCAATACGCAATTGGAGGGAGCATGAATCCAAGCGTCAAGAGTGAAGCCAACCTGTTCATCGCATCAAAATCAAAACAGGCAATAATGACATAA 930 51.51 MGATQLFVLSLISLTLLSAVSYSEGNGLKMNAIDRCWRSNPYWRRNRQQLGVCSVGFVGKMTNNIGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKSKVWITFQKDMHILLHKPLLISSYTAIDGRGASVHISGNACLVVSKATNIIIHGLIIHHCKAQGAGQVMGPNSKLVSLGHVDGDAIRLVSASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHEDGYVRDKNMRVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQAIMT 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9340364 9341401 + CmoCh13G011610.1 Cmo13g01161 395216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01161 309 Pfam Pectate lyase 120 298 IPR002022 -
Cmo13g01161 309 PANTHER PECTATE LYASE 17 301 - -
Cmo13g01161 309 PANTHER PECTATE LYASE 18-RELATED 17 301 IPR045032 GO:0030570
Cmo13g01161 309 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Cmo13g01161 309 PRINTS Pollen allergen Amb family signature 259 278 IPR018082 -
Cmo13g01161 309 PRINTS Pollen allergen Amb family signature 179 200 IPR018082 -
Cmo13g01161 309 PRINTS Pollen allergen Amb family signature 78 103 IPR018082 -
Cmo13g01161 309 PRINTS Pollen allergen Amb family signature 115 131 IPR018082 -
Cmo13g01161 309 Gene3D - 30 308 IPR012334 -
Cmo13g01161 309 SMART amb_all 107 304 IPR002022 -
Cmo13g01161 309 SUPERFAMILY Pectin lyase-like 30 302 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01161 Cmo-Chr13:9340364 Cmo13g00799 Cmo-Chr13:7568287 7.89E-91 dispersed
Cmo01g00805 Cmo-Chr1:4233678 Cmo13g01161 Cmo-Chr13:9340364 1.41E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01161 K01728 - csv:101217103 531.561