Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01176 ATGGAAGGAAGTGACCAAATTCAGTATCATCATCGTCCGCCTACTTCGTTTCCTCTCCAATTGTTAGAGAAGAAGGAATACGATCCCCAGCCGCCTCCCGAGCCCTCTAAGAAGCCCTCGCCCAAGAGGACCTCCACCAAAGACCGCCACACCAAAGTGGATGGCCGCGGCCGCCGTACCCGGATGCCTGCGCTTTGTGCTGCTAGAGTTTTCCAGCTCACCCGTGAGCTCGGCCACAAGTCCGACGGCGAAACCATCGAGTGGCTTCTTCAACAGGCCGAGCCTGCTGTTATTGCTGCCACTGGTACCGGCACAATTCCGGCCAACTTTAACTCCCTCAATACCTCCTTAAGAAGATCGGCCACCAGCATTTCCTTACCATCTCAACTAAGATCCTCATCTTACTATCACCCCGGAGGTAGGCTGTTTTATTTGGATATTTTTGGTGTAAGAAAAAAGTTTCAAATGATGGCGTTCAACTCTCAACCAATGAATATGGGTCCAATGACGCATGCAAAAGAAGATCACTTGCCTGACCCGCAGCGGAGCTATGTGCAGCAAGCCACCACAGGGCTACTCCCGACGACTATTCCGGCCAACTTTTGGATGTTCTCCGATGGCAACAGCCAATTACTCAGCGGCGGAGGTGACTCTCTATGGAGGCTTCCACCGGCCAACCAAGACAACGCTTTATACAGAGGACAAGCCTCCGGTAGTGTTCGTTTCTCGAATCTGGCTGCTCCATTGACGCTTCTCCCCGGAAAGCCATTGGGTCCCAGTGGCAGCGGTGGAAGCATGAACGATGGACATATGAATATCTACGCCGGCCAAAATAGGGCGCATGGGGCGGCTCCGGACAGCAGTGTCTCATAA 873 53.04 MEGSDQIQYHHRPPTSFPLQLLEKKEYDPQPPPEPSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGGRLFYLDIFGVRKKFQMMAFNSQPMNMGPMTHAKEDHLPDPQRSYVQQATTGLLPTTIPANFWMFSDGNSQLLSGGGDSLWRLPPANQDNALYRGQASGSVRFSNLAAPLTLLPGKPLGPSGSGGSMNDGHMNIYAGQNRAHGAAPDSSVS 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9377630 9378806 - CmoCh13G011760.1 Cmo13g01176 395231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01176 290 MobiDBLite consensus disorder prediction 1 59 - -
Cmo13g01176 290 ProSiteProfiles TCP domain profile. 46 100 IPR017887 -
Cmo13g01176 290 PANTHER TRANSCRIPTION FACTOR TCP23 29 280 - -
Cmo13g01176 290 MobiDBLite consensus disorder prediction 40 59 - -
Cmo13g01176 290 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 280 IPR005333 GO:0003700
Cmo13g01176 290 Pfam TCP family transcription factor 44 151 IPR017887 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00203 Cmo13g01176 CCT
Cmo11g00159 Cmo13g01176 CCT
Cmo10g00203 Cmo13g01176 ECH
Cmo11g00159 Cmo13g01176 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01176 Cmo-Chr13:9377630 Cmo11g01602 Cmo-Chr11:11466057 1.16E-38 dispersed
Cmo10g00203 Cmo-Chr10:910288 Cmo13g01176 Cmo-Chr13:9377630 3.24E-79 wgd
Cmo11g00159 Cmo-Chr11:799344 Cmo13g01176 Cmo-Chr13:9377630 2.04E-78 wgd
Cmo13g01176 Cmo-Chr13:9377630 Cmo18g01183 Cmo-Chr18:11881839 2.62E-53 wgd
Cmo13g01176 Cmo-Chr13:9377630 Cmo04g01729 Cmo-Chr4:8756861 8.64E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10887 PF03634 TCP 2.10E-35 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01176 - - csv:101218047 307.375