Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01179 ATGGAAAGTGAGTGCAAAACCCATCTTCCCAAGGTTTTCATCTCTTCATATCTTGAACACCATCAACTTCCTTCTGCTATCACCTCAAACCAAAACCCTTTCTTCTCCAAAAACATGAAGAAGACGACCATCACTGCAGAAGAAGAGATTGGAGTGTTCAGAGCTGAAAGGTACTATGGCATGAAACTGGAAGATGACAGCACAAGAGTTGTTGAGAATTGTGGTAGCAACCAGGCAAAGAAGAAAGAACAACGACCTGATGTGCAGTCTAGGAGACAAAAGAGCAGACCAGGAGCTCCAAGTGTGTCTTCTGAATCAAGTTGGAACAGCCAAGCTACCTTTTCATCTCAGAACACCCAAAATAAGACAAAAGGAAGAAGCCTGCTGGTCAACCTTACCTGCAACAGCTCCTGTTCTGATAAAAAATCTATTCTTGTCCATAGGAATATGTATGACCAAAGAGGATTGCAAGGCAGTGATGTCAGAAAAGAAGCTTCCAGGAATGAACAAATTCCTGTCATCATGGATGCCAGAATCAAGTTTCAAACAGTGAATTTTGTAAAACAAAAACCAAAAAGTTCAATTTCAGGTGGGTCAACTAGAGAAGAAGAGTTTATATTTCCAGTTTCAAGCTCTCAGTTGCAAAACTTTTCAAAGATCAAGGATGAAGATCCTAGAAAATCCATTGAAGTATTCGGCTCAAACAAGTTGGATAAGAAAGACTTAGTGGCTAAGAATCTAGAGAGGAAGCTGTCTGTTCTAAAATGGGATGCCATTCCAAAAGCTAAGGCCACTCAAACTGCTCCAAGAACCGATCCAATGATTGAAGATATAGGGAGCGATGCAAGTTCCGATCTGTTCGAGATCGAAAACTTATCTGGAAGCAATGGAAAGCCATTCACAAGACAGACTTCAGATGTTAGACCAAGCTCCATCACAGCTTATGAGCCAAGTGAAGGCAGCATTGAGTGGAGTGCAGTCACTGCCAGTGCAGCTGATTTCTCATCTGTTGCAGACTATGATGAAAAGAAAGTTACAGCCAGGACTAAAGCCACGGTATTGGACAAGGATTTGCACAAAAGTCACCCTACTGGACTGTTAGGCTGCAAAAGTCACAAGTCGGTCAGCATAGCTGAACCTGCATACAGAAATATCGATAAGTTGAATTCTGATTCTAGACGTTTCCCAAGATTGGACTCAACCATGATGGCTAGTAACGCGACAGGCTGA 1230 42.11 MESECKTHLPKVFISSYLEHHQLPSAITSNQNPFFSKNMKKTTITAEEEIGVFRAERYYGMKLEDDSTRVVENCGSNQAKKKEQRPDVQSRRQKSRPGAPSVSSESSWNSQATFSSQNTQNKTKGRSLLVNLTCNSSCSDKKSILVHRNMYDQRGLQGSDVRKEASRNEQIPVIMDARIKFQTVNFVKQKPKSSISGGSTREEEFIFPVSSSQLQNFSKIKDEDPRKSIEVFGSNKLDKKDLVAKNLERKLSVLKWDAIPKAKATQTAPRTDPMIEDIGSDASSDLFEIENLSGSNGKPFTRQTSDVRPSSITAYEPSEGSIEWSAVTASAADFSSVADYDEKKVTARTKATVLDKDLHKSHPTGLLGCKSHKSVSIAEPAYRNIDKLNSDSRRFPRLDSTMMASNATG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9388562 9389791 - CmoCh13G011790.1 Cmo13g01179 395234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01179 409 MobiDBLite consensus disorder prediction 76 92 - -
Cmo13g01179 409 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1-RELATED 7 403 IPR039615 GO:0009638
Cmo13g01179 409 MobiDBLite consensus disorder prediction 94 122 - -
Cmo13g01179 409 MobiDBLite consensus disorder prediction 70 122 - -
Cmo13g01179 409 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 3 7 403 IPR039819 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01179 - - - bhj:120082468 677.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01179 Cmo-Chr13:9388562 Cmo06g00055 Cmo-Chr6:344323 1.22E-08 dispersed
Cmo01g00821 Cmo-Chr1:4392754 Cmo13g01179 Cmo-Chr13:9388562 0 wgd
Cmo13g01179 Cmo-Chr13:9388562 Cmo18g01181 Cmo-Chr18:11863691 2.11E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g539 Blo04g00769 . . . . Bpe13g00286 . . Cmo13g01179 . . . . . . Cpe20g00025 . . . . . . . . . . . . . . . . . . . Lsi02g00066 Csa01g00538 Chy12g01550 Cme12g02004 . . . Bda14g00848 . Bpe15g00603 . . . . . . . Car13g00960 . . . . . . . . . . Cla04g01205 Cam04g1271 Cec01g1779 Cco01g1826 Clacu04g1299 Cmu04g1275 Cre01g1565 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008262 1 1 3 0 2 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 35