Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01185 ATGGCAGAGCAAAACAGAGTGGTGCTTCATGGGATGTGGGCGAGCCCTTTTGCGAAGAGGGTCGAACTCGCCCTCAAAATCAAAGGCATCCCTTTTGAGTATGTGGAGGAAGATATCCAGAACAAAAGCCCAGAGCTTGTTAAGCTCAATCCTGTTTACAAGAAAGTTCCTGTACTCGTCCACAATGGAAGACCCATTTGCGAATCCTTTGTAATTATGGAGTACATAGATGAAGTTTGGAAGAATAATGGGCCTCCCCTTCTACCTCAAGATCCCTACAGACGATCCCAGATTCGATTCTGGGCTGATTTCGTTCAGAAACAGGTGTTTGAGGGTCTCTTCTTATCGTTGACGACTGAAGGGGAAGCACAGGAGAAAGCCATTAAGGAAGTGAAAGAGAAGTTGAAAGTTCTTGAAGAACAGGGGTTGAAGAGTTTGCTGTCGGAGGCAGAGGGCAGTCCATTTGTGAACGGCGACGAACTTGGATTCTTGGACATAGTGACGCTGACAGTACTTGGAATGTACGAGATTCACGAAGAGTTTTCTGGAATGAAACTTGTTGAAGAAGAGAAGATCCCAATTATGTACTCGTGGTTGAACAGGTTGAAGGAGCACCCAGTTGCAAAGGAGGCAGGGGCTCCCAAGGAAAAGCTGGGTTCAGATAATGCCACGGGGCTTCTCCGGGAACAGAGTCGGCTTCCGGCGAGCAGAAGACGGCGACTGATGAAACGCTGTGTGAGACAGAGACTTGATGGACGACACGAGGAGAGGATGGAGAGAAATGAAATGAATAGCAGAGAACTTCACTGCCTTGCGTTATTCAGCAAATGCAGATCTCTTAGAACCTTGAAGCAAATCCACGCTTTTACGTTCAAAACAGGCTTAAATTCCGACCCATTAGTCGCCGGCAAGCTTCTTCTTCATTGTGCAGTTACACTTCCTGATTCTGTTCGCTATGCTGGACGCCTCTTCCTTGACATTCGAAATCCAGATGTGTTCATGTACAACACACTCATCCGTGGACTTTCCGATTCTGACACCCCCTCTCATGCCCTTCTACTGTTTGTTGAAATGCGTCGCAAATCCATGGCTTTACCCGATAGTTTCTCTTTTGCTTTTCTGCTCAAAGCTGCCGCTAATTGCAGGGCTCTCAGAAATGGGTTGCAATTGCATCGCCAAGCTATTGGTTTTGGTCTGGATACCCATCTTTTTGTTGGGACGACACTGATCAGCATGTATGCTGAATGTGCAAGTTTGGCCTTTGCACGGCAGGTGTTTGATGAAATGATTGAACCAAATATTGTTGCTTGGAATGCCATTGTTGCTGCGTGTTTTAGGTGCGAGGACGTTAAGGATGCAGAGCAAGTGTTCCATCGGATGTCCATAAAAAATTTAACCTCGTGGAACATCATGCTTGCAGGGTACACAAAAGCAGGTGAGCTTCGGCTAGCCAGGGAGGTGTTTATGAAAATGCCTTTGAAAGATGAGGTTTCGTGGAGTAGTATGATTGTTGGGTTCGCTCATAATGGCAGCTTTAACAACGCTTTCGCATTTTTCAGGGAGTTGCGGCAGGAAGGGATGAGACCAAATGAGGTAAGCCTCACAGGTGCGCTTTCTGCATGTGCACAAGCTGGGGCATTCGAGTTTGGAAGAATCCTACATGGGTTTGTTGAAAAATCTGGCTTTCTGCATATTGTTTCAGTGAGTAATGCACTGATCGATACTTACTCTAAATGTGGGAATTTGGATATGGCTCGTTTGATCTTTGATAATATGCTGGAAAGGAGTGTTGTCTCTTGGACAGCCATGATTACGGGGCTCGCAATGCATGGCTACGGGGAGGAAGCAATCAGATTATTTAATGAGATGGAAGAGTCTAATATTAAGCCCGACGGTATCACCTTTATATCCATCTTGTATGCTTGTAGCCATGCTGGATTGGTTGATTTGGGATGTTCTTATTTTTCAAGGATGGTAAATATTTACGGTATTGAACCCGTAATTGAACATTATGGTTGCATAGTTGATCTTTATGGTCGAGCTGGTAAGCTGCAGCAAGCTTTTGACTTTGTGTCTCAAATGCCAGTTTCACCGAATGATATTGTCTGGAGGACACTTCTTGGAGCTTGTAGCATTCATGGTAACTTAGAACTGGCAGGGCAAGTAAAGAGGCGACTCTTTGAACTCGACCCCGAAAACTCTGGAGATCATGTTCTTTTGTCAAACATTTATGCAGTTGCGGGGAAATGGAAGGATGTTGCCACTTTAAGAAGATCAATGACTCACCAGAAACTTAAGAAAACTCCTGGTTGGAGCATGATTGAAGTCGATAGAATCATGTATAGTTTTGTTGCAGGAGAAAAGCAAAATGACATAGCAGAAGAGGCACATCAAAAACTAAGGGAGATAATGTCGAGGCTGAGGATAGAAGGAGGTTATGTTCCAGAAGTTGGAAGTGTATTGCATGATATAGAAGTGGAAGAAAAGGAAGACTCTGTTTCACAGCACAGTGAGAAGCTAGCAGTTGCTTTTGGGATGGTAAGGCTGCCAAGAGGAAGAGGCATAAGAGTGGTGAAGAATTTAAGAATTTGCAGGGACTGTCACACTGTGATGAAGCTGATTTCTAGGGTGTATGAAGTAGAAATTGTGAAGGGAAAGCCTGCAAATAAGCTGATATCAGAATCAAACCAGAAAACGGATAACCTGCTTCATCAATGGAATTGCAACAGATCACTGGTCCTTGCAAAAGTTAGCAAGCCCAAAGAATATTGTTGA 2775 44.5 MAEQNRVVLHGMWASPFAKRVELALKIKGIPFEYVEEDIQNKSPELVKLNPVYKKVPVLVHNGRPICESFVIMEYIDEVWKNNGPPLLPQDPYRRSQIRFWADFVQKQVFEGLFLSLTTEGEAQEKAIKEVKEKLKVLEEQGLKSLLSEAEGSPFVNGDELGFLDIVTLTVLGMYEIHEEFSGMKLVEEEKIPIMYSWLNRLKEHPVAKEAGAPKEKLGSDNATGLLREQSRLPASRRRRLMKRCVRQRLDGRHEERMERNEMNSRELHCLALFSKCRSLRTLKQIHAFTFKTGLNSDPLVAGKLLLHCAVTLPDSVRYAGRLFLDIRNPDVFMYNTLIRGLSDSDTPSHALLLFVEMRRKSMALPDSFSFAFLLKAAANCRALRNGLQLHRQAIGFGLDTHLFVGTTLISMYAECASLAFARQVFDEMIEPNIVAWNAIVAACFRCEDVKDAEQVFHRMSIKNLTSWNIMLAGYTKAGELRLAREVFMKMPLKDEVSWSSMIVGFAHNGSFNNAFAFFRELRQEGMRPNEVSLTGALSACAQAGAFEFGRILHGFVEKSGFLHIVSVSNALIDTYSKCGNLDMARLIFDNMLERSVVSWTAMITGLAMHGYGEEAIRLFNEMEESNIKPDGITFISILYACSHAGLVDLGCSYFSRMVNIYGIEPVIEHYGCIVDLYGRAGKLQQAFDFVSQMPVSPNDIVWRTLLGACSIHGNLELAGQVKRRLFELDPENSGDHVLLSNIYAVAGKWKDVATLRRSMTHQKLKKTPGWSMIEVDRIMYSFVAGEKQNDIAEEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMVRLPRGRGIRVVKNLRICRDCHTVMKLISRVYEVEIVKGKPANKLISESNQKTDNLLHQWNCNRSLVLAKVSKPKEYC 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9402736 9406095 + CmoCh13G011850.1 Cmo13g01185 395240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01185 924 Pfam Glutathione S-transferase, C-terminal domain 119 206 IPR004046 -
Cmo13g01185 924 Pfam PPR repeat 670 695 IPR002885 -
Cmo13g01185 924 Pfam PPR repeat 467 492 IPR002885 -
Cmo13g01185 924 Pfam PPR repeat 497 526 IPR002885 -
Cmo13g01185 924 CDD GST_C_Tau 92 218 IPR045074 GO:0004364|GO:0006749
Cmo13g01185 924 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Cmo13g01185 924 Gene3D Tetratricopeptide repeat domain 651 846 IPR011990 GO:0005515
Cmo13g01185 924 Gene3D Glutaredoxin 1 87 - -
Cmo13g01185 924 SUPERFAMILY GST C-terminal domain-like 78 217 IPR036282 -
Cmo13g01185 924 Pfam DYW family of nucleic acid deaminases 812 883 IPR032867 GO:0008270
Cmo13g01185 924 PANTHER - 273 845 - -
Cmo13g01185 924 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Cmo13g01185 924 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Cmo13g01185 924 CDD GST_N_Tau 7 80 - -
Cmo13g01185 924 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Cmo13g01185 924 SUPERFAMILY Thioredoxin-like 6 108 IPR036249 -
Cmo13g01185 924 TIGRFAM PPR: pentatricopeptide repeat domain 435 461 IPR002885 -
Cmo13g01185 924 TIGRFAM PPR: pentatricopeptide repeat domain 497 531 IPR002885 -
Cmo13g01185 924 TIGRFAM PPR: pentatricopeptide repeat domain 598 631 IPR002885 -
Cmo13g01185 924 TIGRFAM PPR: pentatricopeptide repeat domain 467 491 IPR002885 -
Cmo13g01185 924 TIGRFAM PPR: pentatricopeptide repeat domain 570 598 IPR002885 -
Cmo13g01185 924 Coils Coil 121 141 - -
Cmo13g01185 924 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 226 IPR010987 -
Cmo13g01185 924 Pfam Glutathione S-transferase, N-terminal domain 9 78 IPR004045 -
Cmo13g01185 924 Gene3D Tetratricopeptide repeat domain 392 463 IPR011990 GO:0005515
Cmo13g01185 924 Gene3D Tetratricopeptide repeat domain 464 549 IPR011990 GO:0005515
Cmo13g01185 924 Gene3D Tetratricopeptide repeat domain 550 649 IPR011990 GO:0005515
Cmo13g01185 924 SFLD Glutathione Transferase (cytosolic) 4 218 IPR040079 -
Cmo13g01185 924 SFLD Main.3: Omega- and Tau-like 4 218 IPR045073 -
Cmo13g01185 924 Gene3D Tetratricopeptide repeat domain 313 391 IPR011990 GO:0005515
Cmo13g01185 924 Pfam E motif 713 775 IPR046848 -
Cmo13g01185 924 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Cmo13g01185 924 Coils Coil 790 810 - -
Cmo13g01185 924 Gene3D - 88 224 - -
Cmo13g01185 924 Pfam Pentatricopeptide repeat domain 429 461 IPR002885 -
Cmo13g01185 924 Pfam PPR repeat family 330 379 IPR002885 -
Cmo13g01185 924 Pfam PPR repeat family 596 642 IPR002885 -
Cmo13g01185 924 PANTHER OS01G0913400 PROTEIN-RELATED 273 845 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01185 - - - cmos:111431396 1619.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02903 Cmo-Chr4:20635243 Cmo13g01185 Cmo-Chr13:9402736 4.67E-136 dispersed
Cmo13g01185 Cmo-Chr13:9402736 Cmo10g00608 Cmo-Chr10:2749382 2.47E-168 dispersed
Cmo14g00013 Cmo-Chr14:75059 Cmo13g01185 Cmo-Chr13:9402736 8.04E-115 dispersed
Cmo13g01183 Cmo-Chr13:9401517 Cmo13g01185 Cmo-Chr13:9402736 4.87E-93 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g546 . Blo16g00186 . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00069 Csa01g00542 Chy12g01546 Cme12g01997 . . . . . . . . . . . Cma13g01130 . . . . . Bhi08g01176 . . Lac10g0072 . . . . . . . . . . . . . .
Vvi17g549 . . . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0848 . . . Lsi02g00070 Csa01g00546 Chy12g01543 Cme12g01996 . . . . . . Bma03g00827 . . . . Cma13g01131 . . . . . Bhi08g01172 . . . Hepe07g2512 . . Cla04g01201 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010028 0 6 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 29