Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01189 ATGTGTACCAAAAACGAATATACTGTCTTGAAAGATATAGTTTCAAAAGTTGTTGATCAGAAAAATGAAATCTTTTGTTTGCGGGAGGAGTTGATTTTTAGACTGAGGGCTTCGAGAATTGAGGGAAATCGAGCACAAGAGAGACGTTTGAAGAATCCAACTGCAATCTATTTTTATAGACAAGTTACTGAAAGTTACACTGGAGCTTTTGTTTTTTACACAAGAATGGGTGATCACATGGTTTTGTGTGTGGACCGCCTCAATAAGCCTGAAAGCTTGCAGTCGCTTCCTGCAACTACTGCTCCAGGGTCTTCTTTAGAATCTTCATCTTCTCAAAATTCAGAGCCACCTGTTTGTGCTATTTCTGTTGAAGATGTGGATGAACATGATGGATCTGAAGAAGACCCCCTTATTCAGTCAGTTGAATGTCGAATATGTCAGGAAGAGGATAGTATTAAGAATTTGGAGATTCCTTGTGCTTGCAGTGGCAGCTTGAAGTATGCTCACAGGAAATGTGTCCAGCGATGGTGCAATGAGAAGGGAGATATAAATTGTGAAATTTGTCATCAGAATTATCAGCCTGGTTATACCTTGCCTGTACCACCCCCTCGCTCGGAAGATACTACCATTGATATGAGTGAAGGTTGGCCAGTCTCTGAAAATGCTTTAGATTTGCATGATCCACGACTTTTGGCTATGGCAGCAGCAGAACGCCACTTTCTTGAGGCAGAATACGATGAATATGCAGATGCCAGTGCAAATGGAACGGCGTTTTGCCGATCTGCTGCTCTGATTTTATTGGCTCTTTTACTGTTGAGGCACGCTCTGTACCTTACAAATGGTGATGGAGAAGATGATGCTTACACTTTTTTCTCGCTTTTATTGCTACGAGCTGTCGGGTTTCTTCTTCCCTGCTACATTATGGCATGGGCTATCAGCATACTACAGCGTCGAAGACAAAGACAGGAAGCTGCAGCGCTTGCAGCAACTGAAGTTGCATTTATGCTGCAGGCAGCACAAGGTCAGAGCCTCCAGTTTACCATTGCTCCAGGGCCTGTAGTGACGCCTCATCAAGAGCCACTCCAATAA 1089 43.34 MCTKNEYTVLKDIVSKVVDQKNEIFCLREELIFRLRASRIEGNRAQERRLKNPTAIYFYRQVTESYTGAFVFYTRMGDHMVLCVDRLNKPESLQSLPATTAPGSSLESSSSQNSEPPVCAISVEDVDEHDGSEEDPLIQSVECRICQEEDSIKNLEIPCACSGSLKYAHRKCVQRWCNEKGDINCEICHQNYQPGYTLPVPPPRSEDTTIDMSEGWPVSENALDLHDPRLLAMAAAERHFLEAEYDEYADASANGTAFCRSAALILLALLLLRHALYLTNGDGEDDAYTFFSLLLLRAVGFLLPCYIMAWAISILQRRRQRQEAAALAATEVAFMLQAAQGQSLQFTIAPGPVVTPHQEPLQ 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9418504 9422299 - CmoCh13G011890.1 Cmo13g01189 395244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01189 362 SMART ringv_2 142 189 IPR011016 GO:0008270
Cmo13g01189 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 76 349 - -
Cmo13g01189 362 SUPERFAMILY RING/U-box 140 193 - -
Cmo13g01189 362 Pfam Protein of unknown function (DUF3675) 194 312 IPR022143 -
Cmo13g01189 362 Pfam RING-variant domain 143 188 IPR011016 GO:0008270
Cmo13g01189 362 MobiDBLite consensus disorder prediction 94 117 - -
Cmo13g01189 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 194 IPR013083 -
Cmo13g01189 362 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 76 349 IPR033275 -
Cmo13g01189 362 CDD RING_CH-C4HC3_MARCH 143 189 - -
Cmo13g01189 362 ProSiteProfiles Zinc finger RING-CH-type profile. 135 195 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01189 - - - csv:101217964 506.908
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00510 Cmo-Chr1:2458651 Cmo13g01189 Cmo-Chr13:9418504 9.41E-101 dispersed
Cmo05g00867 Cmo-Chr5:5671466 Cmo13g01189 Cmo-Chr13:9418504 4.62E-107 dispersed
Cmo13g01189 Cmo-Chr13:9418504 Cmo14g00876 Cmo-Chr14:4645441 9.96E-47 dispersed
Cmo01g00827 Cmo-Chr1:4424101 Cmo13g01189 Cmo-Chr13:9418504 3.11E-177 wgd
Cmo13g01189 Cmo-Chr13:9418504 Cmo18g01172 Cmo-Chr18:11837026 3.96E-66 wgd
Cmo13g01189 Cmo-Chr13:9418504 Cmo04g01735 Cmo-Chr4:8785286 9.18E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g554 Blo04g00770 . . . . . . . Cmo13g01189 . . . . . . Cpe20g00017 . . . . . . . . . . . . . . . Cone2ag0845 Cone16ag0170 . . Lsi02g00075 Csa01g00552 Chy12g01538 Cme12g01990 . . . Bda14g00852 . Bpe15g00601 Bma03g00831 . . . . Cma13g01135 . Car13g00966 . . . Bhi08g01164 Tan05g2438 . Lac10g0079 Hepe07g2507 . . Cla04g01196 Cam04g1255 Cec01g1766 Cco01g1813 Clacu04g1285 Cmu04g1261 Cre01g1554 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000419 4 6 4 4 3 3 6 3 3 3 3 3 6 3 3 6 3 6 6 3 3 3 3 3 3 3 3 12 6 2 122