Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01192 ATGTTGGATTGTAAGGATCCTGCTATTAAGCTTTTTGGCCGGAATATCCCTCTTTCCGACGACGTTGAAGCTCCGGCGGTTCATTCCCATGACTTCAGTTCTGAGAAACATGCAGAACCCAGGAAGGACGCATGTGTAGATGATCTTGAGAAACCTGTTGATGGTTCAGATGATTCAAGAAATCTGGAGGGCGGGCAAGAGGGTAGCGTGAATCCCAAAACGCCGTCTATAGATGAAGAAACTGCGAGACCCATTAATGGAGAACCAGAGAGTGAGAGGCTTAATTCAGAGAAAACCCTAAAGAAACCTGATAAATTGCTTCCATGTCCTCGCTGCAAAAGCATGGACACAAAGTTTTGTTACTACAACAATTACAATGTCAATCAACCTCGCCATTTTTGTAAGGCTTGTCAAAGATACTGGACCGCTGGAGGCATCATGAGGAACGTGCCGGTTGGAGCCGGTCGCCGGAAGAGCAAAAACTCTGCTTCTTATTACCGTCACATCACAATCTCTGAGGCTCTTGAAGCTGCTGAAATTGAGGCTTCAAATGGAACCCACAAACCAAAATTCATTGGTAACTGTGGCAGAGTCCTCAGTTTCAATTTGGATGCACCCAGTTCTATCCCTAAAGGGTGTGATAAAAGCTCGAGTTTGTCTTCTATGGCAGTTCAAACACCATCAGAATTGAAAACCAATGGCTTCCCTTCTCAAATTTCTTGTCTTTCTGGAGTTCCGTGGCCTTTGGTTTGGAATTCATCAGTTTCTCCACCACCCTTCGCCCCTCCAGGATTTCCCTTTTCTTTTCTTCCAGCAACTACTTGGAGCTGTGGGGTTCCAGGACCATGGAACACCCCGTGGTTTTCACCACAAGATTCCACAGCACAAAAATCTAAAGCTTCTCCAACACTGGGAAAGCATCAAAGAGACAATGAAATGGCGAAAGAAGATGCCATTTCAAGTAAAGAAGAGGGAGTTAAGCAGAGAAATGGATGTGTATTGACCCCAAAGACTTTAAGGATTGATGACCCAAGTGAGGCTGCAAAAAGTTCCATATGGGCAACGCTTGGGATAAAGAATGAATCAATGAGTGGGGGAAGAAATCTGTTCAAACCCTTTGAACCCAAGGGCCATGAGAAGGTTCCTGTTTCTAAAAACGCCTCAGTGTTGCAGGCAAACCCTGCAGCCTTGTCGAGATCTCTCGTCTTTCATGAGAGCTCTTGA 1224 45.34 MLDCKDPAIKLFGRNIPLSDDVEAPAVHSHDFSSEKHAEPRKDACVDDLEKPVDGSDDSRNLEGGQEGSVNPKTPSIDEETARPINGEPESERLNSEKTLKKPDKLLPCPRCKSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGIMRNVPVGAGRRKSKNSASYYRHITISEALEAAEIEASNGTHKPKFIGNCGRVLSFNLDAPSSIPKGCDKSSSLSSMAVQTPSELKTNGFPSQISCLSGVPWPLVWNSSVSPPPFAPPGFPFSFLPATTWSCGVPGPWNTPWFSPQDSTAQKSKASPTLGKHQRDNEMAKEDAISSKEEGVKQRNGCVLTPKTLRIDDPSEAAKSSIWATLGIKNESMSGGRNLFKPFEPKGHEKVPVSKNASVLQANPAALSRSLVFHESS 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9426937 9429111 + CmoCh13G011920.1 Cmo13g01192 395247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01192 407 MobiDBLite consensus disorder prediction 289 327 - -
Cmo13g01192 407 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Cmo13g01192 407 MobiDBLite consensus disorder prediction 303 324 - -
Cmo13g01192 407 PANTHER CYCLIC DOF FACTOR 2 1 406 IPR045174 GO:0003700|GO:0006355
Cmo13g01192 407 MobiDBLite consensus disorder prediction 83 99 - -
Cmo13g01192 407 PANTHER CYCLIC DOF FACTOR 1 1 406 - -
Cmo13g01192 407 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Cmo13g01192 407 Pfam Dof domain, zinc finger 105 161 IPR003851 GO:0003677|GO:0006355
Cmo13g01192 407 MobiDBLite consensus disorder prediction 26 61 - -
Cmo13g01192 407 MobiDBLite consensus disorder prediction 26 99 - -
Cmo13g01192 407 MobiDBLite consensus disorder prediction 62 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01192 - - - cmos:111431399 820.846
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g00169 Cmo13g01192 CCT
Cmo10g00211 Cmo13g01192 CCT
Cmo10g00211 Cmo13g01192 ECH
Cmo11g00169 Cmo13g01192 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01039 Cmo-Chr11:5711965 Cmo13g01192 Cmo-Chr13:9426937 1.31E-91 dispersed
Cmo13g01192 Cmo-Chr13:9426937 Cmo14g00585 Cmo-Chr14:2984812 1.35E-81 dispersed
Cmo01g00829 Cmo-Chr1:4438108 Cmo13g01192 Cmo-Chr13:9426937 0 wgd
Cmo10g00211 Cmo-Chr10:943198 Cmo13g01192 Cmo-Chr13:9426937 3.19E-119 wgd
Cmo11g00169 Cmo-Chr11:826368 Cmo13g01192 Cmo-Chr13:9426937 1.19E-116 wgd
Cmo13g01192 Cmo-Chr13:9426937 Cmo18g01164 Cmo-Chr18:11816423 1.67E-60 wgd
Cmo13g01192 Cmo-Chr13:9426937 Cmo04g01744 Cmo-Chr4:8813998 1.00E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g562 . . . . Bpe12g00543 . . . Cmo13g01192 . Cma10g00196 Cma11g00141 Car10g00186 Car11g00154 . Cpe20g00016 Cpe04g01497 . . . . . . . Cla06g01588 Cam06g1757 Cec06g1813 Cco06g1816 Clacu06g1723 Cmu06g1666 Cre06g2480 . . . . Lsi02g00077 Csa01g00554 Chy12g01536 Cme12g01987 . . . . . . . Bma08g00224 Sed02g0836 Cmo10g00211 Cmo11g00169 Cma13g01138 . Car13g00968 . . Cpe18g00789 Bhi08g01160 Tan05g2435 Cmetu12g0332 Lac10g0082 Hepe07g2505 . . Cla04g01194 Cam04g1252 Cec01g1763 Cco01g1810 Clacu04g1282 Cmu04g1258 Cre01g1552 Lsi06g01460 Csa01g00239 Chy02g02493 Cme02g01879
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011465 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10889 PF02701 zf-Dof 5.10E-32 No_clan Cmo TF