Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01195 ATGGGAAGGGTTAAGCTGAAAATAAAAAAATTGGAGAGCACTGGTAGCAGGCAAGTGACCTTCTCTAAGAGAAAAAATGGGATTATGAAGAAAGCTAAGGAGCTGGCTATACTCTGCGATATTGATATCGTTCTCCTCATGTTTTCGCCAACTGGAAAGCCGACGCTATATCAAGGTGAACGCAGCAGCATCGAGGAGGTCATTACAAAATTTGCTGAATTGACTCCACAGGAGAGGGCAAAAAGGAAACTGGAAAGCCTTGAAGCGCTGAAGAAAACATTCAAGAAGTTAGACCACGATGTAAACATAAAAGATTTTGTGGGTTCAAGCTATTGGAGGAATCCTGATAGTATCAGCAATATACAACAGCTCCAACAGATGGAAGGTTTAATAAGGGAGTCCCTAAACCAGACACGTCTACACAAGGAAAATTTAAGAAGACACCAACTTCTCTCACAGGAATTCACGGGCCAGTATCCGGGTGGTGAGATGTCCTTACCTTTGTTAATGGACGAAATGCAAGGCATTCAACCCCTGTTATGGCTTCCCAACTATGGGACTCAACAGATTACTTTGCCAAATGAGCCTAACTTTCTGCAACCAGGTGATGTTGAATGCTCATTTCCAAGCTATCCCAGTTACTACAACCCTGGGAAGCAAATTGAAGCTGGAGTATCTGGTCAAGTTGATAGCATGCCACAGGGTGATGGGGGTTTAAATGAATTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGAGCAATATCAATACCCCCCTACATGTGATGGTTCCAGCTTCCAAGATGAAAAGAGACTGAACCTTGAGATGGAGATGAATTTGCATGGAAATTATGTGGACAACCAACTAAATGGGAAGTTGGACCTCTCAAGATCTCTATATGATGATGAGCAGCATCCTTGGGGTTCTATACCAGGGCCTTGTAGCATTCCAATGTACCAAAGCAGCAATGCGTACCACCACCATAGATTAAAATTGGTGCCATTCTTTTGTGGGGCTCTTCTATTTTATGCTGACAATCTCTGGACGGCCGTTTGTTTTCTCTGCGCCATGGCTTGTTCGTTGAAGACTGGTCTCTCTGTTTCAGGGCTGAAGGATCGTTTGTGTTACTCTAATTCATCTGGGGTTTCTGGGTTTTCTACTTCTGTTTGTGCTTCCAGTTTAAAAGTGTCAAAGCAGCCGGGGTTTCCTCTTTTGAGCGTCGATTTCTTGGGGAATCCTGTAGTGATTTCGGATCGAAATGGTATTAGAAACTCAAACGCTAAAGCCCCAAATAGACTGACCGTTTATGCACAGGCATCGATTTGTGTAAGCCGAGCTCGGAGATGGTGGGAAAAAACCCTGAAACCTAACATGGTGGAGATCCATTCTGCACAAGCCCTTGTGGATGCATTGCTTGATGCTGGCGACAGATTAGCCATTATTGACTTCTATTCCCCTGGCTGTGGAGGTTGCAAAGCCCTTCATCCTAAGATCTGTCAACTGGCTGAATTGAACCCTGATGCAATTTTTCTGAAAGTTAACTTTGAGGAGCTCAAAACCATGTGCCAAGCTCTCCATATTCGTGTTCTTCCTTTCTTTGATTCTATAGAGGCGGAGAAGGTCGTGTCTGTAGCTTCAGCTATTAAGAAATTCAAGGATGCATTGGCTAAACACGGAAGCGACCGGAGTAGCATCCTTCCAGCCAAAGGATTAGACGAGTCGGAGCTGGAACGGTTATATCTGAAGGAAAGAACATTGAAGGGTGTAGCGATGAAAGAAATGGATTGTTACGGTTCTTGGGGAACATCAGGCAATAAAATGGAAGTCATGGAAGAGAACAACATGATTCTTAAGATTACCACGCACGTACTCCACGTGTCACGTGGGTTCCAGCTATACCCCCCAGATCCTGGAACTGACGTGGATTAA 1932 44.25 MGRVKLKIKKLESTGSRQVTFSKRKNGIMKKAKELAILCDIDIVLLMFSPTGKPTLYQGERSSIEEVITKFAELTPQERAKRKLESLEALKKTFKKLDHDVNIKDFVGSSYWRNPDSISNIQQLQQMEGLIRESLNQTRLHKENLRRHQLLSQEFTGQYPGGEMSLPLLMDEMQGIQPLLWLPNYGTQQITLPNEPNFLQPGDVECSFPSYPSYYNPGKQIEAGVSGQVDSMPQGDGGLNELSGTSCSTLQLGEQYQYPPTCDGSSFQDEKRLNLEMEMNLHGNYVDNQLNGKLDLSRSLYDDEQHPWGSIPGPCSIPMYQSSNAYHHHRLKLVPFFCGALLFYADNLWTAVCFLCAMACSLKTGLSVSGLKDRLCYSNSSGVSGFSTSVCASSLKVSKQPGFPLLSVDFLGNPVVISDRNGIRNSNAKAPNRLTVYAQASICVSRARRWWEKTLKPNMVEIHSAQALVDALLDAGDRLAIIDFYSPGCGGCKALHPKICQLAELNPDAIFLKVNFEELKTMCQALHIRVLPFFDSIEAEKVVSVASAIKKFKDALAKHGSDRSSILPAKGLDESELERLYLKERTLKGVAMKEMDCYGSWGTSGNKMEVMEENNMILKITTHVLHVSRGFQLYPPDPGTDVD 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9434322 9441106 + CmoCh13G011950.1 Cmo13g01195 395250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01195 643 ProSiteProfiles Thioredoxin domain profile. 424 586 IPR013766 -
Cmo13g01195 643 Coils Coil 77 97 - -
Cmo13g01195 643 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Cmo13g01195 643 Gene3D Glutaredoxin 449 559 - -
Cmo13g01195 643 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Cmo13g01195 643 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 105 - -
Cmo13g01195 643 CDD TRX_family 475 557 - -
Cmo13g01195 643 Pfam Thioredoxin 472 545 IPR013766 -
Cmo13g01195 643 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo13g01195 643 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo13g01195 643 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo13g01195 643 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 111 327 - -
Cmo13g01195 643 PANTHER SERUM RESPONSE FACTOR HOMOLOG 111 327 - -
Cmo13g01195 643 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cmo13g01195 643 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 105 - -
Cmo13g01195 643 SUPERFAMILY Thioredoxin-like 448 560 IPR036249 -
Cmo13g01195 643 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo13g01195 643 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01195 - - - cmax:111495072 660.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01195 Cmo-Chr13:9434322 Cmo14g02170 Cmo-Chr14:15566877 2.28E-32 dispersed
Cmo01g00835 Cmo-Chr1:4459543 Cmo13g01195 Cmo-Chr13:9434322 5.69E-123 transposed
Cmo06g01725 Cmo-Chr6:11847989 Cmo13g01195 Cmo-Chr13:9434322 1.47E-51 transposed
Cmo14g01153 Cmo-Chr14:9020936 Cmo13g01195 Cmo-Chr13:9434322 1.49E-45 transposed
Cmo01g00833 Cmo-Chr1:4449565 Cmo13g01195 Cmo-Chr13:9434322 0 wgd
Cmo13g01195 Cmo-Chr13:9434322 Cmo18g01160 Cmo-Chr18:11794852 4.31E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g568 Blo04g00776 Blo16g00183 . . . Bpe13g00297 . . Cmo13g01195 . . . . . . Cpe20g00014 . . . . . . . . . . . . . . . Cone2ag0839 Cone16ag0176 . . Lsi02g00083 Csa01g00562 Chy12g01531 Cme12g01980 . . . . . . . . Sed08g2081 . . Cma13g01140 . Car13g00971 . . . Bhi08g01145 Tan05g2429 . . Hepe07g2500 . . Cla04g01189 Cam04g1246 Cec01g1757 Cco01g1802 Clacu04g1274 Cmu04g1253 Cre01g1546 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023289 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10890 PF00085 Thioredoxin 6.80E-11 CL0172 Cmo TF