Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01199 ATGAAGTTTAAATCCACTAACCGTTCATTCAATTCATACCCAGATGAAAATCATGCAAGTATTAGGAGATTGATGAGGCACACTGAGGATGATCACAAGAACCTATGGGACAAGGATCCGCTCAGCGATTTGAAGAACAACCAGGAAATGAAATGTGGGTTCAGTTCGATTCGAGTAATGGGTATGTTTGCGGTTTTAATGATGTTCATTTCTGTGGTCTTTTCTGTCTCTGTGGTTCTTAGAGACCCACCATCCGATGCTGTAATTGAAGGTTCAGATGTGTGGATTCCTCAGTGGAACTCCGACCCAGTAGATTCTAAGGATGGAGATCTTCATAGGGATATAGAGGCAGTTGATAAACTGCTTAGTGGCCTTCTTTCTGCCAAACATGAGGAAGGTTCTTGTCTTAGTAGGTACAATTCAGCTTCATATCAACGCAAGCTGGCGTACCAACCCTCTTCTTACCTGATCTCCAAATTGCGGAGTTATGAAGATCTTCATAAGCGTTGTGGAGTCTACACTGAGTCTTACAACAAAACTTTGGAGCAGCTTGGGTCTAATGGTAGTAGCAGCTCCTCGGACTGTAAATATGTTGTGTGGATTTCCTTCAGTGGATTAGGGAATAGAATACTAACCCTCGCTTCAGCATTTCTTTATGCTCTCCTCACAAATCGGGTTCTACTTGTTGACCCTGGAACTGACATGGCTGATCTCTTCTGTGAACCGTTTCCTGAGGTTTCCTGGTTTCTGCCCCAAGATTTCCCGTTGAAACATAAATTCAGCAAATTCAACCACAACTCTCCTAATTGCTATGGGAAAATAATGAAGAACAATAGGAGCACAGATCCAAGTGGAATGATTTTGCCATCTCTTGTTTATCTTCATTTGGTCCATGATTATGATGATGATGACAAGCTTTTTTTCTGTGATCAACACCAATCTCTTCTGCACCAATCCCCTTGGCTTGTTATGAAAACAGACAACTATTTTGTCCCCTCTCTCTTTTTGATCCCATCATTCGAGAAAGAACTTCATGATCTTTTCCCAAATAAAGATACAGTTTTCCACTTCTTGGGTCGATATCTGATTCATCCCGTGAATTCAGTTTGGGGACTGATTACGAGATATTATCAGGCTTACTTGGCTAGAGCTAGTGAAAGAATAGGCATTCAGATTAGAGTGTTTGATACAGGAACTGGACCTTTTCAACACATCTTGGATCAGGTTTTGGACTGTACCCTGAAGGAGAATCTGTTGCCACAAACGGAAAGGCGAACAAATGTGGTCGGTCTGGCTAGTAGTCGAAAGTCAAAGGCCGTGCTGATAACTTCCTTGACCGCTGGTTACTTCGAGAAGTTGAGAGATATTTACTGGGAGAATCCGACGGTGACGGGAGAGAGAGTTAGTTTCTACCAACCAAGTCATGAGGAACACCAGCAAACTGAGAAGAGTATACATAACCAGAAGGCATTGGCAGAGATGTATTTGTTAAGTACAACTAATGTAGTGGTCACTAGTTCATGGTCGACCTTTGGATATGTGGCTCAAGGTCTTGGCGGTCTGAAACCATGGATATTGTACAAACCCGAGAATCGTACTGCACCGAATCCACCCTGCGGTCGAGCCATGTCCATGGAGCCCTGTTTCCATGCACCTCCTTTCTATGACTGCAAGGCTAAGAAAGGAGTGGACACTGGCAAACTTGTTCCTCATGTGAGGCATTGCGAGGACATGGCCTGGGGGCTTAAGTTGGTTGATCAACAGGATTGA 1770 43.45 MKFKSTNRSFNSYPDENHASIRRLMRHTEDDHKNLWDKDPLSDLKNNQEMKCGFSSIRVMGMFAVLMMFISVVFSVSVVLRDPPSDAVIEGSDVWIPQWNSDPVDSKDGDLHRDIEAVDKLLSGLLSAKHEEGSCLSRYNSASYQRKLAYQPSSYLISKLRSYEDLHKRCGVYTESYNKTLEQLGSNGSSSSSDCKYVVWISFSGLGNRILTLASAFLYALLTNRVLLVDPGTDMADLFCEPFPEVSWFLPQDFPLKHKFSKFNHNSPNCYGKIMKNNRSTDPSGMILPSLVYLHLVHDYDDDDKLFFCDQHQSLLHQSPWLVMKTDNYFVPSLFLIPSFEKELHDLFPNKDTVFHFLGRYLIHPVNSVWGLITRYYQAYLARASERIGIQIRVFDTGTGPFQHILDQVLDCTLKENLLPQTERRTNVVGLASSRKSKAVLITSLTAGYFEKLRDIYWENPTVTGERVSFYQPSHEEHQQTEKSIHNQKALAEMYLLSTTNVVVTSSWSTFGYVAQGLGGLKPWILYKPENRTAPNPPCGRAMSMEPCFHAPPFYDCKAKKGVDTGKLVPHVRHCEDMAWGLKLVDQQD 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9446633 9448774 - CmoCh13G011990.1 Cmo13g01199 395254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01199 589 Gene3D - 372 531 - -
Cmo13g01199 589 PANTHER 2-ALPHA-L-FUCOSYLTRANSFERASE, PUTATIVE-RELATED 23 588 - -
Cmo13g01199 589 PANTHER FUCOSYLTRANSFERASE 2-RELATED 23 588 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cmo13g01199 589 Pfam Xyloglucan fucosyltransferase 116 558 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cmo13g01199 589 Gene3D - 192 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01199 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101219153 986.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01199 Cmo-Chr13:9446633 Cmo16g00514 Cmo-Chr16:2484209 1.35E-167 dispersed
Cmo01g00838 Cmo-Chr1:4470695 Cmo13g01199 Cmo-Chr13:9446633 0 wgd
Cmo13g01199 Cmo-Chr13:9446633 Cmo04g01754 Cmo-Chr4:8850998 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g575 . . . . . . . . Cmo13g01199 . . . . . . Cpe20g00012 . . . . . . . . . . . . . . . Cone2ag0834 Cone16ag0180 . . Lsi02g00086 Csa01g00565 Chy12g01529 Cme12g01977 . . . . . . . . . . . Cma13g01145 . Car13g00974 . . . . . . . . . . Cla04g01186 Cam04g1243 Cec01g1754 Cco01g1800 Clacu04g1271 Cmu04g1250 Cre01g1543 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g01199 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 6.8e-151 531.6
Cmo04g01754 . 100 551 Xyloglucan Fucosyltransferase1 AT1G14080 55.5 2.2e-149 526.6
Cmo01g00838 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 52.3 2.9e-149 526.2
Cmo13g01199 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.8 2.0e-160 563.1
Cmo04g01754 . 81 542 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 2.9e-159 559.3
Cmo01g00838 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.5 6.1e-157 551.6
Cmo13g01199 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 52.1 3.9e-134 475.7
Cmo04g01754 . 81 541 Xyloglucan Fucosyltransferase1 AT1G14110 52.6 9.7e-133 471.1
Cmo19g00620 . 1 524 Xyloglucan Fucosyltransferase1 AT1G49710 63.2 5.6e-187 651.4
Cmo16g00380 . 5 515 Xyloglucan Fucosyltransferase1 AT1G49710 62.7 5.5e-182 634.8
Cmo15g00565 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.4 6.6e-167 584.3
Cmo04g02596 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 68.3 1.7e-162 569.7
Cmo04g01754 . 6 552 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 3.6e-174 609.0
Cmo13g01199 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.9 1.3e-168 590.5
Cmo01g00838 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 1.8e-165 580.1
Cmo04g01754 . 36 552 Xyloglucan Fucosyltransferase1 AT2G03220 62.8 1.4e-191 666.8
Cmo01g00838 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.8 1.6e-187 653.3
Cmo13g01199 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.9 1.7e-184 643.3
Cmo16g00514 . 108 599 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 1.0e-149 527.7
Cmo04g01754 . 101 551 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 9.8e-147 517.7
Cmo13g01199 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.7 2.8e-146 516.2
Cmo13g01199 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 51.0 5.4e-140 495.4
Cmo04g01754 . 101 551 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 1.6e-139 493.8
Cmo04g01754 . 92 551 Xyloglucan Fucosyltransferase1 AT2G15390 53.1 1.2e-142 504.2
Cmo13g01199 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.2e-142 504.2
Cmo01g00838 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 4.9e-141 498.8
Cmo19g00620 . 1 524 Xyloglucan Fucosyltransferase1 AT3G19280 62.7 1.0e-185 647.1
Cmo16g00380 . 5 515 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 5.7e-184 641.3
Cmo04g00523 . 48 186 Xyloglucan Fucosyltransferase1 AT3G19280 57.6 3.1e-36 150.6
Cmo04g01754 . 6 552 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 3.6e-174 609.0
Cmo13g01199 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.9 1.3e-168 590.5
Cmo01g00838 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 1.8e-165 580.1
Cmo04g01754 . 36 552 Xyloglucan Fucosyltransferase1 AT2G03220 62.8 1.4e-191 666.8
Cmo01g00838 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.8 1.6e-187 653.3
Cmo13g01199 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.9 1.7e-184 643.3
Cmo16g00514 . 108 599 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 1.0e-149 527.7
Cmo04g01754 . 6 552 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 3.6e-174 609.0
Cmo13g01199 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.9 1.3e-168 590.5
Cmo01g00838 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 1.8e-165 580.1
Cmo04g01754 . 92 551 Xyloglucan Fucosyltransferase1 AT2G15390 53.1 1.2e-142 504.2
Cmo13g01199 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.2e-142 504.2
Cmo01g00838 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 4.9e-141 498.8
Cmo13g01199 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 51.0 5.4e-140 495.4
Cmo04g01754 . 101 551 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 1.6e-139 493.8
Cmo13g01199 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 6.8e-151 531.6
Cmo04g01754 . 100 551 Xyloglucan Fucosyltransferase1 AT1G14080 55.5 2.2e-149 526.6
Cmo01g00838 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 52.3 2.9e-149 526.2
Cmo13g01199 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.8 2.0e-160 563.1
Cmo04g01754 . 81 542 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 2.9e-159 559.3
Cmo01g00838 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.5 6.1e-157 551.6
Cmo13g01199 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 52.1 3.9e-134 475.7
Cmo04g01754 . 81 541 Xyloglucan Fucosyltransferase1 AT1G14110 52.6 9.7e-133 471.1
Cmo04g01754 . 101 551 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 9.8e-147 517.7
Cmo13g01199 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.7 2.8e-146 516.2
Cmo19g00620 . 1 524 Xyloglucan Fucosyltransferase1 AT3G19280 62.7 1.0e-185 647.1
Cmo16g00380 . 5 515 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 5.7e-184 641.3
Cmo04g00523 . 48 186 Xyloglucan Fucosyltransferase1 AT3G19280 57.6 3.1e-36 150.6
Cmo19g00620 . 1 524 Xyloglucan Fucosyltransferase1 AT1G49710 63.2 5.6e-187 651.4
Cmo16g00380 . 5 515 Xyloglucan Fucosyltransferase1 AT1G49710 62.7 5.5e-182 634.8
Cmo15g00565 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.4 6.6e-167 584.3
Cmo04g02596 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 68.3 1.7e-162 569.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012658 0 0 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 29