Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01200 ATGGCTGTTGCTCCGTTATGTCAATCCACTATGCAACCCCAGGTGAGTGGCTTTATCGGAGGCCTCACTTTTCAGAAACCAGCTCCTTCTCAACCTACCTCTCTTCCCTTTTCGAGGAGGAGGTTCAGAAATGTGGTAAAAGCTTCAGCTCGGGTTGATAAATACTCAAAATCTGATATAATCGTCTCTCCCTCCATCCTCTCTGCTAACTTTGCAAAATTGGGAGAGCAGGTGAAAGCAGTGGAACTGGCAGGTTGTGATTGGATTCATGTTGACGTAATGGATGGTCGTTTTGTTCCAAATATCACAATTGGACCTCTTGTCGTTGATGCTCTACGCCCTGTGACAGATCTTCCTTTAGATGTGCATTTGGTATGCTTCTTTCTCATTTTGATTCCCCTTGGTGTTAGCAGTGATTCTTAA 423 44.44 MAVAPLCQSTMQPQVSGFIGGLTFQKPAPSQPTSLPFSRRRFRNVVKASARVDKYSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLVCFFLILIPLGVSSDS 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9449487 9452333 + CmoCh13G012000.1 Cmo13g01200 395255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01200 140 Gene3D Aldolase class I 50 127 IPR013785 -
Cmo13g01200 140 PANTHER - 15 125 - -
Cmo13g01200 140 Pfam Ribulose-phosphate 3 epimerase family 62 125 IPR000056 GO:0005975|GO:0016857
Cmo13g01200 140 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 89 103 IPR000056 GO:0005975|GO:0016857
Cmo13g01200 140 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 15 125 IPR000056 GO:0005975|GO:0016857
Cmo13g01200 140 SUPERFAMILY Ribulose-phoshate binding barrel 55 125 IPR011060 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01200 K01783 rpe, RPE; ribulose-phosphate 3-epimerase [EC:5.1.3.1] - csv:101219871 226.098
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01200 Cmo-Chr13:9449487 Cmo15g00083 Cmo-Chr15:418987 7.47E-16 dispersed
Cmo01g00839 Cmo-Chr1:4473334 Cmo13g01200 Cmo-Chr13:9449487 1.52E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g576 Blo04g00777 Blo16g00182 . . . Bpe13g00298 Bma06g00168 . Cmo13g01200 . . . . . . Cpe20g00011 . . . . . . . . . . . . . . . Cone2ag0833 Cone16ag0181 . . . Csa01g00566 Chy12g01528 Cme12g01976 . . Bda11g01705 Bda14g00858 . Bpe15g00597 Bma03g00837 . Sed08g2085 . . Cma13g01146 . Car13g00975 . . . Bhi08g01141 Tan05g2423 Cmetu12g1896 Lac10g0094 Hepe07g2496 . . Cla04g01185 Cam04g1241 Cec01g1753 Cco01g1799 Clacu04g1270 Cmu04g1249 Cre01g1542 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004286 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43