Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01203 ATGGATTGCAAGGAGCTCAATTTGAACGAAGATTGTGGTGCCTGTGGTAGCGGGGTAAAAAATGGAGGAGATGCGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGCTCAGCTAGACAGGTCATCGATGCTTTGAATGCGGAGGGACCTGAAATTGATATTATACTCTCAGAAGTTGACCTGCCAATGGCCAAAGGTATGAAAATGTTGAAGTATATCACCCGGGATAAAGAGCTCCGGCGCATTCCTGTTATCAACCCAAGTGATGCCAACACAAATAGTACTACTTTGTTCTCGGATGATACTGATGACAAGTCACGTAGGAGCACAAATCCAGAGATGGGAGTTGCAACACTCCAGGAAGATGAGTCTGGTATTGCTGCCGCACTGGTAGAACCTCCTGCTGTTCATACAGTGGAACATCAGCCAGATGTACCTGGAATTAGCGAGCGCCGAATAGGGCAACCATCTTCATGCCCCAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACGTATGTCAAATCAAGAAGTGTGAAGAATAAGGCAGTAGACGTTGAGGACAATGGCAAACGACTTTGGCTGGATGAAAATCATCAAGAAAAAACTGGTCAGCCTGTAGTTCGTCTTCCCCCCATACCAGAAAGTGTGGAGGCCTTGGAAAGCCATTCACAAGGAGACGAAATCCCAAGTAGTACTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACGCCACCTGCTGGCTCAGGAGTTCACAAGGAAAGAAGCTTCAATGAAGAAAATTGCTCTCAAGTGCATGTGCAACCGCCAAATGGATCTCAACTTGATATTTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCCTTCTATACGCCAGAAGGTATGATGTCGGCGCAACTGTACCAAAAGAACTTGCACGATATGCATAATCATGCGGCAATGATGTCACAGTACGGTCATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCATCTTATCCTTATTACCCCATGAATATATGTTTACAACCTGGTCAAATGCCCGCTACTAATAATACTCATTCATGGCCATCTTTTGGAAATTCATCTTCCAATGAAGCGAAATCGAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAGCGGTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAGCGACTTGCAGAAAGGAGGCCCCGTGTGCGGGGTCAGTTTGTGAGAAAGGTAAATGGTGTCAATGTAGATCTTAATGGACAACCTGCATCTGCTGATGATGTCGAGGATGAAGACGAGGAGGAGCAACTATCAAGGGATTCCTCTCATGAGGATGATGGAGATCCAATTCTGCTGTTACTACATGATCATTTGCTTGCACCAGGTCCTAGTAGCCCTACGGTAACTGGTGGCTGGAAACCGCATCTCTTGAGAGTAATTTTACCCGGTCTTGCTGCTCATGCAGTTCCTAAGCAGGGGGGGTCTTGA 1608 44.65 MDCKELNLNEDCGACGSGVKNGGDAFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVINPSDANTNSTTLFSDDTDDKSRRSTNPEMGVATLQEDESGIAAALVEPPAVHTVEHQPDVPGISERRIGQPSSCPRKSELKIGESSAFFTYVKSRSVKNKAVDVEDNGKRLWLDENHQEKTGQPVVRLPPIPESVEALESHSQGDEIPSSTSFPDSFSVERSCTPPAGSGVHKERSFNEENCSQVHVQPPNGSQLDISGLPVQTQTAYPFYTPEGMMSAQLYQKNLHDMHNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPATNNTHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASADDVEDEDEEEQLSRDSSHEDDGDPILLLLHDHLLAPGPSSPTVTGGWKPHLLRVILPGLAAHAVPKQGGS 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9454384 9457908 + CmoCh13G012030.1 Cmo13g01203 395258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01203 535 MobiDBLite consensus disorder prediction 464 479 - -
Cmo13g01203 535 MobiDBLite consensus disorder prediction 165 189 - -
Cmo13g01203 535 Pfam CCT motif 408 450 IPR010402 GO:0005515
Cmo13g01203 535 ProSiteProfiles CCT domain profile. 408 450 IPR010402 GO:0005515
Cmo13g01203 535 ProSiteProfiles Response regulatory domain profile. 33 149 IPR001789 GO:0000160
Cmo13g01203 535 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 4 111 - -
Cmo13g01203 535 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 110 468 - -
Cmo13g01203 535 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 111 IPR045279 GO:0009736
Cmo13g01203 535 PANTHER TWO-COMPONENT RESPONSE REGULATOR 110 468 IPR045279 GO:0009736
Cmo13g01203 535 MobiDBLite consensus disorder prediction 292 309 - -
Cmo13g01203 535 MobiDBLite consensus disorder prediction 111 137 - -
Cmo13g01203 535 MobiDBLite consensus disorder prediction 454 486 - -
Cmo13g01203 535 Gene3D - 25 136 - -
Cmo13g01203 535 MobiDBLite consensus disorder prediction 254 274 - -
Cmo13g01203 535 SUPERFAMILY CheY-like 28 115 IPR011006 -
Cmo13g01203 535 MobiDBLite consensus disorder prediction 247 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01203 K12127 TOC1, APRR1; pseudo-response regulator 1 - csv:101220107 725.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01203 Cmo-Chr13:9454384 Cmo07g00992 Cmo-Chr7:4870674 5.26E-08 dispersed
Cmo01g00841 Cmo-Chr1:4482550 Cmo13g01203 Cmo-Chr13:9454384 3.25E-65 wgd
Cmo11g00182 Cmo-Chr11:877863 Cmo13g01203 Cmo-Chr13:9454384 1.32E-110 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g582 . . . . . . . . Cmo13g01203 . . . . . . Cpe20g00010 . . . . . . . . . . . . . . . Cone2ag0830 . . . . Csa01g00568 . . . . . . . . . . . . . . . Car13g00976 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10892 PF06203 CCT 8.90E-15 CL0281 Cmo TR