Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01208 ATGATAGCCAATACGCCCGCCTCGGCCTCCCTCTCTCTTCCTTCTTCGGAGCCTTACTCGTGCTTAGAAAATGGAAGCAGCAACAGCAACAAGAGGAAAAGAAGGCCTGCGGGCACCCCAGATCCTGATGCAGAGGTGGTGTCTCTCTCCCCCAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTACAGATGCACAGACGGCGGCATAAGGTGCCTTGGAAGCTGTTGAAGAGGGAGACTCCTGTTGTGCGGAAAAGGGTTTTCGTTTGCCCGGAGCCCAGCTGTCTGCACCACGACCCTTGCCACGCCCTCGGCGATCTGGTTGGCATCAAGAAGCACTTCCGAAGAAAGCACAGCAACCACAAGCAGTGGGTTTGTGAAAAGTGCTCCAAGGCCTACGCCGTTCAGTCTGATTACAAGGCCCATCTCAAAACCTGTGGCACCCGTGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGCAATATGGGGCATCTCCGCCAAGAATCCCAAACCCTCCACCCCGCGTGTTTGTCCCGAACGGCTTCCAGTCCAAGCCCACCCAGCGACGCTAACTTCACGGCGCCACCCACTGCCATCTTCTTAGCCCCCACCGACGACTCCATCATCAACAACAACAATAATAATAGCCATCACAATCTAGACCTCAAACTCTCAACTTCTACATCAAATGAAGGTTCTTCCACGCAACTACAGCTTTCGATCGGGTCGTGTGATTTTGGGGACAAGAAGAAAAGGGTGCAGTTGTTGGATGATGAGAAAGGTGGGGGCCGGGGGCCGGGGGGTGTTAGAGAAGAAGCGCGGGAAGAGCTAAGAGAGGCAATGGCGGAGAAGGCGTACGCGGAGGAGGCAAGGCAACAGGCGAAGCGGCAGATAGAAATGGCAGAGGAAGAATTCGTGAACGCAAAGAGGATGAGGCAACAGGCACAGGCGGAGTTAGATAAGGCTACAGCTCTTAAACAAGCGGCAATAAAACAGATAAACTCAACCCTTCTTGAGATCACTTGTCAAGCATGCCAGAAGCAATTTCAAGCCAAGCCCACAACTACTACTACTACTACTGCACCCGCTGACCATGACACTTCCGTAGCATTCAGTTACGTATCCTCAGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAAGCAACCCTTATACCTAATTAA 1260 52.62 MIANTPASASLSLPSSEPYSCLENGSSNSNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTLHPACLSRTASSPSPPSDANFTAPPTAIFLAPTDDSIINNNNNNSHHNLDLKLSTSTSNEGSSTQLQLSIGSCDFGDKKKRVQLLDDEKGGGRGPGGVREEAREELREAMAEKAYAEEARQQAKRQIEMAEEEFVNAKRMRQQAQAELDKATALKQAAIKQINSTLLEITCQACQKQFQAKPTTTTTTTAPADHDTSVAFSYVSSVITTEGEVEKDQATLIPN 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9482716 9485415 + CmoCh13G012080.1 Cmo13g01208 395263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01208 419 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Cmo13g01208 419 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Cmo13g01208 419 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 13 410 - -
Cmo13g01208 419 Coils Coil 295 357 - -
Cmo13g01208 419 MobiDBLite consensus disorder prediction 1 47 - -
Cmo13g01208 419 SUPERFAMILY beta-beta-alpha zinc fingers 59 157 IPR036236 -
Cmo13g01208 419 MobiDBLite consensus disorder prediction 202 222 - -
Cmo13g01208 419 MobiDBLite consensus disorder prediction 1 27 - -
Cmo13g01208 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Cmo13g01208 419 PANTHER OS03G0310200 PROTEIN 13 410 IPR039288 GO:0009630
Cmo13g01208 419 SMART c2h2final6 60 82 IPR013087 -
Cmo13g01208 419 SMART c2h2final6 137 164 IPR013087 -
Cmo13g01208 419 SMART c2h2final6 101 131 IPR013087 -
Cmo13g01208 419 Gene3D Classic Zinc Finger 47 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00783 Cmo-Chr1:4105944 Cmo13g01208 Cmo-Chr13:9482716 0 dispersed
Cmo13g01006 Cmo-Chr13:8563956 Cmo13g01208 Cmo-Chr13:9482716 2.85E-160 dispersed
Cmo13g01208 Cmo-Chr13:9482716 Cmo15g00913 Cmo-Chr15:4635933 1.52E-140 dispersed
Cmo13g01208 Cmo-Chr13:9482716 Cmo18g00067 Cmo-Chr18:451754 4.67E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10894 PF00096 zf-C2H2 0.0039 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01208 K25871 - csv:101209426 632.484