Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01209 ATGATGGAATTAATGATAGCAACTGGGAAAGCAGTTCCTAAGTTGCAGCTAGAGCATGGGTTGGCTGTTGACAGAATGTACACTGATCAAGCTGTTTTGCAACGGTTGGATGCTGCAACCAAGGCTCCTTGTTGGCCCATTGGTGCTGATGGCAATCACCCACCTGCCAAAATACCTGTTCCAATACCACCACCAGCTCTTGCTACAAAGAACGGGGAGACATTTGGTGGACCCCTTCAACTAAATCAACAAGGCCTCATCCTAGAGGCTGCAATTGAGGCAGCTGCCAAAGCAGTGATCAATCTCAAGGACGCATTAAATGAATGGGATAGCAAAGTGGGTGATGGTGATTGTGGGTCAACGATGTTCAGGGGTGCAACAGCTGTTCTTGAGGACATAAAATGGCAAGCTGATGGCCATCTTAGGGCAGGCCTTCAGGGGTTATTGCAAGTGCCAAGGGCTGAAGCATTAGAAGCTTCCATTGCTGCAATTAGCAAGTATGGTGGGGCTACTGCTGGTTATCGAACATTACTTGATGCCCTCATTCCAGCGTCTGAAGTTCTTAGGAAGAGGTTAGATGCTGGTGAAAATCCAACCACCGCTTTTATTCAATCATCTGAAGCAGCATCGGCTGGGGCTGAAGCAACAAAGAACATGCAGGCTCTGGCTGGCCGTTCGTCCTATGTATTTGGAGAACTCCTCGCAGCAGTTCCAGATCCAGGTGCAATGGGCGCTGCAGCATGGTACAAAGCTGCGGCTATGGCTGTCAGGGACAAGAGCCTTCACACTTGA 792 49.24 MMELMIATGKAVPKLQLEHGLAVDRMYTDQAVLQRLDAATKAPCWPIGADGNHPPAKIPVPIPPPALATKNGETFGGPLQLNQQGLILEAAIEAAAKAVINLKDALNEWDSKVGDGDCGSTMFRGATAVLEDIKWQADGHLRAGLQGLLQVPRAEALEASIAAISKYGGATAGYRTLLDALIPASEVLRKRLDAGENPTTAFIQSSEAASAGAEATKNMQALAGRSSYVFGELLAAVPDPGAMGAAAWYKAAAMAVRDKSLHT 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9486730 9497334 - CmoCh13G012090.1 Cmo13g01209 395264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01209 263 Pfam DAK2 domain 154 252 IPR004007 GO:0004371|GO:0006071
Cmo13g01209 263 PANTHER TRIOKINASE/FMN CYCLASE 1 134 - -
Cmo13g01209 263 PANTHER TRIOKINASE/FMN CYCLASE 154 260 - -
Cmo13g01209 263 Gene3D - 83 150 IPR036117 GO:0004371|GO:0006071
Cmo13g01209 263 Gene3D - 151 258 IPR036117 GO:0004371|GO:0006071
Cmo13g01209 263 PANTHER DIHYDROXYACETONE KINASE 154 260 - -
Cmo13g01209 263 PANTHER DIHYDROXYACETONE KINASE 1 134 - -
Cmo13g01209 263 SMART Dak2_2 112 254 IPR004007 GO:0004371|GO:0006071
Cmo13g01209 263 ProSiteProfiles DhaL domain profile. 86 254 IPR004007 GO:0004371|GO:0006071
Cmo13g01209 263 Coils Coil 88 108 - -
Cmo13g01209 263 SUPERFAMILY DhaL-like 84 252 IPR036117 GO:0004371|GO:0006071
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01209 - - - csv:101209672 362.844
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g944 . . . . . . . Bma12g01273 Cmo13g01209 . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0309 Lsi02g00014 Csa01g00489 Chy12g01592 Cme12g02050 . Blo15g00052 . . Bpe07g01078 . . . . . . . . Car13g00981 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003104 1 8 1 1 2 1 1 3 2 3 1 1 1 1 1 1 2 1 1 3 1 1 1 2 3 1 1 2 3 1 52