Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo13g01210 ATGGCTGGGTTGAGATTTACCATGCTGCTGCTAATTTGCCTCTTGGCTGCAGCAATGTCAACCGTCCGGGGTGAGGACCCTTATTTCTTCTTCACGTGGAATGTCACCTATGGCACCATCTCCCCCTTGGGTTCTCCCCAACAAGGCATTCTCATCAACGGTCAATTCCCCGGACCTGATATCAACTCCACAACCAACAATAACCTAGTTATTAATGTCTTCAATAATCTGGATGAACCCTTCCTTCTGCATTGGAGCGGTGTCCAACACAGAAAGAACTCGTGGCAGGATGGAGTACTTGGAACCAATTGCCCAATCCCACCAGGGACAAACTTCACCTATCATTTCCAGGTTAAGGATCAAATTGGAAGCTTCTTCTACTACCCATCAACAGCCATGCATAGGGCTGCAGGAGGCTTTGGCGGTCTTCGTGTCAACAGCCGTTTACTCATTCCTGTCCCTTATGCTGATCCTGAAGATGATTACACTGTCCTTATTGGTGATTGGTACATCAACAGCCATTCTACGCTTAAGGGGTTCTTGGATAGTGGGCGTTCCTTTGCTAGACCCGACGGTGTCCTTATTAACGGCAAAGTTGCCAAGGGTGATGGGACTGATGACCCACTCTTCACCATGAAGCCTGGGAAGACTTACAAGTACCGAATTTGCAACGTTGGACTGAAGGTATCTCTTAACTTTAGGTTCCAAGGCCACACCATGAAGTTAGTAGAGATGGAGGGCTCTCATACTGTCCAAAACACTTACCAATCACTTGATGTCCATGTGGGACAATGCTTTTCAGTGCTAGTCACAGCCAACCAAGACCCTAAAGACTATTACATGATTGCATCAAGTCGATTCACTAAGAACCTTCTTGTCGGTAAAGGCATTGTTCGATACACCAATGGGAATGGTATCGCCTCTCATGAAATTCCTGAGGCACCCATCGGTTGGGCTTGGTCCCTCAATCAATTTCGTACCTTCCGTTGGAACCTTACTGCCAGCGCTGCTAGGCCTAATCCTCAGGGCTCATATCACTATGGTTCCATCAACATTACTCGCACCATCAAGATACTCAATTCGGTCGCAAATGTTGATGGTAAGTTGCGATATGCCATCAATGGAGTCTCTCATATTGACCCTGAAACTCCACTAAAGCTTGCAGAGTACTTCGGAGTTGCAGAAAAGGTCTTCAAATATGATACAATTTCTGATGAAGGATTGGCGGAAAGTGGAAATAATGTTAAAATTGCTCCAAATGTTGTTAACGCAACCTTCCGCAACTTCATAGAGATTATATTTGAGAACCATGAAAAGAGTCTCCAGTCATGGCATTTGGATGGCCACTCCTTTTTCGCGGTTGCCATTGAGCCGGGGAGATGGACTCCAGAGAAGCGAAAGAATTATAATCTTCTGGATGCCGTGAGCAGACATACAATCCAAGTTTTTCCTAAATCGTGGGCAGCCATTCTGCTTACATTAGACAATGCTGGAATGTGGAACTTGAGGTCAGAATTGACAGAGAATCGTTACTTGGGACAACAGTTATACTTCAGCGTTCTTTCACCCGCTCGCTCTCTTAGAGATGAATACAACATCCCGGATAAGACTTTGATTGAAAACATGGTCTCCATGGTGTCAGCCCGTACCGGAAGACACAGGCAGCGCTTCAATAAAGAGTATCGCCTGGTTGTAGGATGCATTCCTTACAGATACAAAGACGCCCAGAAATCGTTTTCGGTTGACAATATAGAAGTTCTTGTGATTAGTTCGCAGAAAGGGCATGCAATGTTGTTCCCGAAGGGTGGGTGGGAAAACGACGAGTCAATGGAAACCGCAGCTTCAAGAGAGACATTCGAGGAAGCTGGAGTGACTGGCAACATCGAAAGCAGATTAGGCAAATGGTATTACAAGAGCAAGAGGCATGCGAAGATGCATGAAGCCTACATGTTCGCTTTGCGTGTAACGAAACAACTGGAAAATTGGCCGGAGAAAGATATCCGAAAGCGAGAATGGATGAGTGTGGAGAAAGCCAGAGAAGTTTGCCCTCACATATCCATTCGACACAACACTACACTACTCAGAGACACCGCCATGGAAGCAGCCACTGGTTCAACTTCAACCCTTGCCATTGGAATTGGATCGCCATTTCGGGACACCGCCCCCAGGCCCCCTGCCTCCCGTTCCCTTTATTTTCCTTCCGAATCCCTCATCTCTGTTCCTCATTATCGGTCCTTCGTTTCTCCATCAAAACTTGGAAAGAAGTCGATTACTCTCCCCTGTAGTGGCCGGGGTCGGGGATTGGGATTCCCAATGGTTAAAGCGTCTCTGTCTCCGGATCCGGATGGTTCTGCTGCCCAAATTGCTCCACTTCGGCTCCAGTCTCCAATTGGCCAGTTTCTGTCTCAAATCCTGACTACCCATCCCCACCTTCTTCCTGCAGCCGTCGACCAGCAGCTTCAACAGCTGCAGACCCAACGTCATGCTGAAGAACTAACTCAAGAGCCCTCCGCTTCAGCTACTCATGACATTGTCTTGTACAGGAGGATTGCTGAGGTTAAGGCAATTGAAAGGAAGAGGGCCTTAGAAGAGATATTATATGCAATGGTGGTGCAACGATTCATGGACGCCGATGTTCCTCTAATACCAGCTGTTGCCCCGTCGTCTACGGATCCATATGGCCGAGTTGACACATGGGCACGAGATGATGAAAAGCTGGAGCGGCTTCACTCGTCGGAAGCAAGCGAAATGATTCAGAACCACCTAGCGCTGGTTTTGGGGAATCGGATTGGTGACTTTGCGTCAGTAGCGCAGATAAGCAAACTAAGAGTGGGGCAGGTGTATGCTGCGTCTGTGATGTATGGGTACTTCCTCAAGCGAGTGGATGAGAGATTTCAGCTTGAGAAGACTGTGAAAGTGCTACCAGCCAGTGCAACTGTTGAGGGCTCCTTCTCCAATGCACCAGTGCATCCTGAAATCTCTTCCATGGCAGCTGAACAGGGAGATGTTAGTCCTGGGGAGTCGGGTATGGGGATCAAGCCCTCCCGACTGCGAACATACGTAATGTCATTTGATGGGGAGACACTGCAGAGATTTGCCACAATAAGGTCAAAAGAGGCCGTTAGCATCATTGAGAGACACACGGAGGCCTTGTTTGGAAGACCCCAGATTGCAATCACCCCGCAAGGAACAGTAGATACCTCCAAAGACGAGCTTATCAAAATCAGCTTTGGTGGGTTGAAGAGACTAGTTTTGGAAGCCGTGACTTTCGGTTCTTTCCTGTGGGATGTGGAGACGTATGTGGACTCCAGATCGACCGAGGCAAGGAAACCTCTGGACGCTGGCATGGCCTTTCAAGGAAAGAAGCTCATCAACAAGCCCGACGATGTGGTGACGGAATTCATTGAGGGTTTGGTGGAAACATATCCTGGATTACAGTACTTGGATGGTTTTCCTAAGGTGAAAGTCGTTCTACGAGCGGATGTTTCAGGCGGTGGAAGTGGACATGAGCCTGCACATGCTGGATTTGTTGGGGAAGGAATGCTGACGGCAGCTATTTGTGGGGATGTTTTTGCCTCTCCACCAGTTGATTCGATTTTGGCTGGAATTCGAGCTGTAACTGGACCTATGGGATGTCTTCTCATCGTGAAGAGTGCTTCAGATGCAATGGGAAGTTTGCTTCGAGTCACGGATGCAAGAGGAAACTTCAAAGCAAACTTGTGCATGATTGTGATGGAGACGAATTATACTGGTGACCGTTTAAATTTTGGTTTGGCTGCGGAGCAAGCAAAATCAGAGGGATATAAAGTAGAGACTGTTATTGTTGGGGATGATTGTGCTTTGCCTCCACCTCGAGGTATAGCTGGCCGTAGAGGTTTGGCTGGGACTGTACTTGTTCACAAGGTTGCTGGAGCTGCTGCTGCTGCAGGGCTCTCTCTTTTAGATGTTGCCACAGAAGCAAAACATGCGGCTGACATGATTGGAACGATGGGAGTCGCATTGTCAGTTTGCACACTGCCTGGCCAGCATGGTGAACCCGGTGCTGCTGTGGCTGACCTTCAGCCAGTTGACGTGATAGTATCTCATGTTCTCAAACAAATATTATCACCGTCTGAAGCAAGCATTTAA 4128 47.97 MAGLRFTMLLLICLLAAAMSTVRGEDPYFFFTWNVTYGTISPLGSPQQGILINGQFPGPDINSTTNNNLVINVFNNLDEPFLLHWSGVQHRKNSWQDGVLGTNCPIPPGTNFTYHFQVKDQIGSFFYYPSTAMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYINSHSTLKGFLDSGRSFARPDGVLINGKVAKGDGTDDPLFTMKPGKTYKYRICNVGLKVSLNFRFQGHTMKLVEMEGSHTVQNTYQSLDVHVGQCFSVLVTANQDPKDYYMIASSRFTKNLLVGKGIVRYTNGNGIASHEIPEAPIGWAWSLNQFRTFRWNLTASAARPNPQGSYHYGSINITRTIKILNSVANVDGKLRYAINGVSHIDPETPLKLAEYFGVAEKVFKYDTISDEGLAESGNNVKIAPNVVNATFRNFIEIIFENHEKSLQSWHLDGHSFFAVAIEPGRWTPEKRKNYNLLDAVSRHTIQVFPKSWAAILLTLDNAGMWNLRSELTENRYLGQQLYFSVLSPARSLRDEYNIPDKTLIENMVSMVSARTGRHRQRFNKEYRLVVGCIPYRYKDAQKSFSVDNIEVLVISSQKGHAMLFPKGGWENDESMETAASRETFEEAGVTGNIESRLGKWYYKSKRHAKMHEAYMFALRVTKQLENWPEKDIRKREWMSVEKAREVCPHISIRHNTTLLRDTAMEAATGSTSTLAIGIGSPFRDTAPRPPASRSLYFPSESLISVPHYRSFVSPSKLGKKSITLPCSGRGRGLGFPMVKASLSPDPDGSAAQIAPLRLQSPIGQFLSQILTTHPHLLPAAVDQQLQQLQTQRHAEELTQEPSASATHDIVLYRRIAEVKAIERKRALEEILYAMVVQRFMDADVPLIPAVAPSSTDPYGRVDTWARDDEKLERLHSSEASEMIQNHLALVLGNRIGDFASVAQISKLRVGQVYAASVMYGYFLKRVDERFQLEKTVKVLPASATVEGSFSNAPVHPEISSMAAEQGDVSPGESGMGIKPSRLRTYVMSFDGETLQRFATIRSKEAVSIIERHTEALFGRPQIAITPQGTVDTSKDELIKISFGGLKRLVLEAVTFGSFLWDVETYVDSRSTEARKPLDAGMAFQGKKLINKPDDVVTEFIEGLVETYPGLQYLDGFPKVKVVLRADVSGGGSGHEPAHAGFVGEGMLTAAICGDVFASPPVDSILAGIRAVTGPMGCLLIVKSASDAMGSLLRVTDARGNFKANLCMIVMETNYTGDRLNFGLAAEQAKSEGYKVETVIVGDDCALPPPRGIAGRRGLAGTVLVHKVAGAAAAAGLSLLDVATEAKHAADMIGTMGVALSVCTLPGQHGEPGAAVADLQPVDVIVSHVLKQILSPSEASI 1375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9503482 9525134 - CmoCh13G012100.1 Cmo13g01210 395265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo13g01210 1375 CDD Nudix_Hydrolase_9 563 688 - -
Cmo13g01210 1375 ProSitePatterns Nudix box signature. 602 623 IPR020084 GO:0016787
Cmo13g01210 1375 SUPERFAMILY Nudix 548 684 IPR015797 -
Cmo13g01210 1375 Pfam Protein of unknown function (DUF760) 846 970 IPR008479 -
Cmo13g01210 1375 SUPERFAMILY Cupredoxins 157 339 IPR008972 -
Cmo13g01210 1375 ProSiteProfiles Nudix hydrolase domain profile. 560 695 IPR000086 -
Cmo13g01210 1375 CDD CuRO_1_AAO_like_1 30 146 IPR034273 GO:0005507
Cmo13g01210 1375 Pfam NUDIX domain 586 678 IPR000086 -
Cmo13g01210 1375 Gene3D - 348 539 IPR008972 -
Cmo13g01210 1375 Gene3D - 30 149 IPR008972 -
Cmo13g01210 1375 SUPERFAMILY DAK1/DegV-like 1239 1371 - -
Cmo13g01210 1375 PANTHER MULTI-COPPER OXIDASE 6 537 IPR045087 -
Cmo13g01210 1375 PANTHER L-ASCORBATE OXIDASE-LIKE PROTEIN 6 537 - -
Cmo13g01210 1375 SUPERFAMILY DAK1/DegV-like 1121 1217 - -
Cmo13g01210 1375 Pfam Multicopper oxidase 34 148 IPR011707 GO:0005507
Cmo13g01210 1375 CDD CuRO_2_AAO_like_1 160 300 IPR034271 -
Cmo13g01210 1375 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 545 692 - -
Cmo13g01210 1375 SUPERFAMILY Cupredoxins 25 174 IPR008972 -
Cmo13g01210 1375 Pfam Multicopper oxidase 160 290 IPR001117 -
Cmo13g01210 1375 Pfam Dak1 domain 1162 1217 IPR004006 GO:0004371|GO:0006071
Cmo13g01210 1375 Pfam Dak1 domain 1240 1345 IPR004006 GO:0004371|GO:0006071
Cmo13g01210 1375 ProSiteProfiles DhaK domain profile. 1126 1375 IPR004006 GO:0004371|GO:0006071
Cmo13g01210 1375 Gene3D - 158 338 IPR008972 -
Cmo13g01210 1375 SUPERFAMILY Cupredoxins 350 526 IPR008972 -
Cmo13g01210 1375 Pfam Multicopper oxidase 384 522 IPR011706 GO:0005507|GO:0016491
Cmo13g01210 1375 Gene3D Dihydroxyacetone kinase; domain 1 1130 1229 - -
Cmo13g01210 1375 Gene3D Dihydroxyacetone kinase; domain 1 1230 1325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo13g01210 K00423 E1.10.3.3; L-ascorbate oxidase [EC:1.10.3.3] - csv:101211152 992.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00776 Cmo-Chr1:4029685 Cmo13g01210 Cmo-Chr13:9503482 1.32E-83 dispersed
Cmo06g00950 Cmo-Chr6:7366169 Cmo13g01210 Cmo-Chr13:9503482 0 dispersed
Cmo13g01009 Cmo-Chr13:8584705 Cmo13g01210 Cmo-Chr13:9503482 1.74E-139 dispersed
Cmo13g01210 Cmo-Chr13:9503482 Cmo20g00002 Cmo-Chr20:91835 0 dispersed
Cmo15g01025 Cmo-Chr15:6046504 Cmo13g01210 Cmo-Chr13:9503482 1.44E-45 dispersed
Cmo18g00065 Cmo-Chr18:431045 Cmo13g01210 Cmo-Chr13:9503482 6.11E-139 dispersed
Cmo13g01210 Cmo-Chr13:9503482 Cmo20g00001 Cmo-Chr20:88394 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g923 . . . . . . . . Cmo13g01210 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi17g925 . . . . . . . . Cmo13g01210 . . . . . . Cpe20g00053 . . . . . . . . . . . . . . . . . . . Lsi02g00012 . . . Blo13g00117 . . . Bpe07g01083 . . . . . . . . Car13g00982 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000048 7 10 7 9 7 11 7 11 13 11 8 10 14 9 12 16 10 16 4 10 12 10 16 10 14 12 11 19 23 4 333