Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00001 ATGAGCGTCGGAAAGAGTCCGGTCAAATCCTTACCGTTCTTGGGTGGTCTCTCCGATCTCGTCGTTTCGTCCGTTTTCCTCACCAAGATCAGCGGCGAATCTTCCCTAGAAGAAGGTAGTAGACTTAATCATTCTACTCCTCAACAAAGATCCCAGATCTGGAAGTCAGCACACCAGCCAAGCCTACCGCCGTCAGAACTGCTGCATCACAGTTCCAATCACAACTTCAGCCACAGCAAACTAAGTGGAGACGAGATGGGCAACTGCGGTACTAGAGAAGAGCCTGCAGTTGTTTCCAATGCTCAAGGTACATTCAGAAAACCCGGATCTAGGGTTTTTATCTTTCAACAGCTGCATACTTCATCGTCTTCCTTGGTTGTGAAAAGCGCCAGCAACAATGCTCCAAATAAAAGACATATTCATAACCGGTCCATATCAGATCTAAGCGATCCCTCGACCCCTCGCAACCTCGAGGACTTTAGAAACAATTCGGTGCTTTACACACATGTTATTGCCTTCACATTATACGAGCTGGAAACGATCACCAAGAGTTTCCGCTCCGATTACATTCTCGGAGAGGGCGGTTTTGGAACTGTTTATAAAGGCTACATTGATGAGAACGTCAGGGTTGGCCTCAAATCTCTTCCTGTCGCTGTCAAGGTTCTCAACAAGGAAGGCCTGCAGGGCCACCGAGAATGGCTTACAGAAGTCAACTTTCTTGGTCAGCTGAGACATCCAAACCTTGTTAAGTTGATTGGTTACTGCTGCGAGGATGATCACAGATTACTTGTCTATGAGTTCATGTTTAGAGGAAGCCTTGAAAACCACCTCTTTCGAAAGACAACTGTTCCATTGCCATGGGCAAGAAGAATGATGATAGCTCTTGGAGCGGCCAAGGGACTTGCATTCCTTCATAATGCTGAAAGGCCTGTCATCTATCGGGATTTTAAAACCTCTAATATACTGTTGGATTCTGACTATGCAGCCAAGCTTTCTGATTTTGGGCTTGCAAAAGCTGGACCACAAGGTGATGAGACACATGTTTCTACTCGAGTAATGGGTACTTATGGTTATGCTGCCCCTGAATATGTCATGACTGGGCACTTGACAGCAAGGAGTGATGTATACAGTTTCGGTGTTGTTCTTCTGGAGCTTTTGACAGGAAGAAAGTCTGTTGACAAGACAAAACCAAGCAAGGAGCAGAATTTAGTAGATTGGGCCCGACCTAAACTAAATGACAAGAGGAAGTTGCTACAGATAATTGACCCCAGATTGGAAAATCAATACTCGATAAGGGCAGCACAGAAGGCTTGCAGCCTAGCATACTATTGCCTGAGCCAGAACCCCAAAGCAAGACCATTAATGAGCGATGTAGTTGAAACTCTGGAACCTTTGCAGAGTGGTAACGGTGCAACTGAATACTCCTTAACGGGAACTAGTCCATTTGTGAGGGGGGGTGTCCGTGATTACAGGATGCGGCAAAGGTTTGCCGACAATGTTGGTCCGGGGGTTAGTTGCCGGTCTGCCAACCCCAACTGTTCCCCGAGCGGCCCTGCAGCATTTTGGGTGGGGGCGTTGGTGGAAACCCAAACTCCAATTGAACTGGTCACTAGTAAGCCACAGAAACTTGGAGAACGGAAGTTTTGCGCCAAAAAATTTGGGGCCATGTCACCTGTGCAAACGCTGCTACTTTTGGCTTTCTTCTGCGCTGGAATCCTCACAACCAGTTCTTTAACTGATCCCACAGATCTTGCGGCTCTGGAAGCCCTGAGAAGCGATTGGGAAAATACACCGCCAAGCTGGGGAGCATCAAATGATCCGTGTGGAACTCCCTGGGAAGGAGTGAGTTGCACCAATTCAAGAGTAACTGCACTGAGATTATCAACTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAATGCTGACTGGACTAAAATCATTGGACCTTTCGTTCAATGTAAATCTTACTGGTACAATCTCTCCAAGATTAGGGGATCTACAGAATTTGAGTATCTTGATCCTGGCTGGGTGTGGGTTCAGTGGCAATATTCCTGAAGCACTGGGCAATCTTTCGGAGCTTTCCTTCTTGGCTTTAAATTCTAACAAATTCACTGGTACCATACCGCCGTCTCTGGGAAAACTCTCCAAACTCTATTGGCTGGACCTGGCAGAGAATCAATTGACAGGTAGCATCCCAGTCTCGACTTCCACATCTCCTGGTTTGGACCTCCTTCTGAATGCTAAACACTTTCATTTCAACAAAAACCAGTTATCAGGTTCCATTTCACCTCAACTTTTTAGCTCTGAAATGGTATTAATACACATATTATTTGATGGAAATCAATTTTCTGGGAGAATACCACAAACATTGGGACTTGTTCAGACCCTTGAGGTTCTGCGACTCGATCGGAATTCTCTAACAGGACCAGTCCCATCAAATCTGAACAACCTAACAAATATCAATGAATTGAATTTAGCCGGCAATAAGTTGACGGGTCCACTGCCAAACCTAACTCAAATGAGCTCACTAAATTACGTGGACCTTAGTAACAACTCATTTGATTCATCGCCAGCTCCAGAATGGTTCTCAAATCTACAATTTCTCACCACTCTGATCGTGGAGAATGGGTTAATACGAGGATCTGTGCCACAAGGAGTGTTTAGTTTACCACAAATACAACAAATAAAACTGAAGAACAATGAATTCAATGACACATTAGATATGGGTGACAAAGTGAGCGAACAGTTGCAGCTCGTTGATTTGCAAAATAACAATATTTCCCATCTTACCCTCGGTTCAAGATATACCAAAACTTTGATGCTGATAGGGAATCCTGTGTGTAGCAATGATGCTACCCTTCCAAACACCAACTACTGCCAGCTTCAAAACCAACCGGTGACATCCTATTCTACCAGCCTTGCCAGCTGTGGAAGTAAGTCATGTTCTTCTGATCAGAAGCTAAGCCCTCAGAGTTGTGAATGTGCCTATCCATTTGAAGGGACTTTATACTTTAGAGCACCCTCGTTCAGGGCATTGTCCAATGTGACTTTGTTTCATTCATTGGAAATGAGCCTTTGGAAAAAACTGGACCTTACGCCTGGTTCAGTTTTTATTCAAAACCCTTTTTTCAATGTTGACGATTATCTTCAGCTGCAGCTTGCACTTTTTCCGCCTGAGGAAAAGTATTTTAGTAGGTCAGATATTCAGAGGATTGGGTTTGACCTGAGTAATCAAACCTACAAGCCTCCCAAAGAATTTGGGCCATTTTATTTCATTGCATCTCCCTACGATTTTGAAGGTCTGATTGGGGTTGGAATATATGCAATTTGGCAAAAGAAACGTGCAGAAAGGGCCATTGGATTGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGAAACGATAGTGGAGGTGCACCACAGCTGAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCATGAGCAATGAGATAGGATCTGGAGGATATGGCAAGGTATACAGAGGAATGCTTGTGGATGGACAAGTAGTTGCAGTCAAAAGAGCTCAGCAAGGGTCAATGCAAGGTGGCCTTGAGTTCAAGACGGAAATCGAACTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGCCTCGTGGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATTTATGCCTAATGGAACACTGAGAGATAGCCTATCTGGAAAATCTGGCATCAATCTTGATTGGAAGAGAAGACTTCGTATTGCACTTGGGTCTGCTAGAGGACTGACTTATTTACATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAATATTCTATTGGATGAGCATTTGAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGAAAAGGGACACGTTTCCACTCAAGTTAAAGGAACGTTGGGTTACTTGGATCCTGAATATTACATGACTCAACAATTAACTGAGAAAAGTGATGTATATAGCTTTGGAGTGGTTATGTTGGAATTGTTAACTGCTAAGCTGCCCATCGAGAAAGGAAAGTACGTAGTTCGTGAGGTGCGTATGTTAATGAATAAAAATGAAGAAGAACATTATGGTCTGAAGCCGATAATGGATGCAACCATGATAAACAGTGCAACCACTATTATTGGGCTTGGAAGGTTCTTGGAGTTGGCCATGCAATGCGTTGAAGAATCAGCTACAGAGCGTCCCACAATGTGCGAAGTGGTGAAGGCAATTGAAACGGTGGATACACTCTTTCTACTAAAGTGGAACCCAAATAGAAATGTTTTTCCTTTCCAGGAATCATTCTCTGTTCACAAGGACAGGGAAACTAGTAGAATTGTAACCATTTTACGCAGTTCAGGATTCTTATTGTCGTTTATGTATTTCCAGATATCGGTTATGCATTCCTTCGACATCGTTCTCATATTGACGATAGTGAACACTTGTACCTAG 4515 43.81 MSVGKSPVKSLPFLGGLSDLVVSSVFLTKISGESSLEEGSRLNHSTPQQRSQIWKSAHQPSLPPSELLHHSSNHNFSHSKLSGDEMGNCGTREEPAVVSNAQGTFRKPGSRVFIFQQLHTSSSSLVVKSASNNAPNKRHIHNRSISDLSDPSTPRNLEDFRNNSVLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKTTVPLPWARRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYAAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTKPSKEQNLVDWARPKLNDKRKLLQIIDPRLENQYSIRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSGNGATEYSLTGTSPFVRGGVRDYRMRQRFADNVGPGVSCRSANPNCSPSGPAAFWVGALVETQTPIELVTSKPQKLGERKFCAKKFGAMSPVQTLLLLAFFCAGILTTSSLTDPTDLAALEALRSDWENTPPSWGASNDPCGTPWEGVSCTNSRVTALRLSTMGLKGKLGGDIGMLTGLKSLDLSFNVNLTGTISPRLGDLQNLSILILAGCGFSGNIPEALGNLSELSFLALNSNKFTGTIPPSLGKLSKLYWLDLAENQLTGSIPVSTSTSPGLDLLLNAKHFHFNKNQLSGSISPQLFSSEMVLIHILFDGNQFSGRIPQTLGLVQTLEVLRLDRNSLTGPVPSNLNNLTNINELNLAGNKLTGPLPNLTQMSSLNYVDLSNNSFDSSPAPEWFSNLQFLTTLIVENGLIRGSVPQGVFSLPQIQQIKLKNNEFNDTLDMGDKVSEQLQLVDLQNNNISHLTLGSRYTKTLMLIGNPVCSNDATLPNTNYCQLQNQPVTSYSTSLASCGSKSCSSDQKLSPQSCECAYPFEGTLYFRAPSFRALSNVTLFHSLEMSLWKKLDLTPGSVFIQNPFFNVDDYLQLQLALFPPEEKYFSRSDIQRIGFDLSNQTYKPPKEFGPFYFIASPYDFEGLIGVGIYAIWQKKRAERAIGLSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSMSNEIGSGGYGKVYRGMLVDGQVVAVKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDSLSGKSGINLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYVVREVRMLMNKNEEEHYGLKPIMDATMINSATTIIGLGRFLELAMQCVEESATERPTMCEVVKAIETVDTLFLLKWNPNRNVFPFQESFSVHKDRETSRIVTILRSSGFLLSFMYFQISVMHSFDIVLILTIVNTCT 1504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 550 28345 - CmoCh14G000010.1 Cmo14g00001 395267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00001 1504 Gene3D Ribonuclease Inhibitor 739 839 IPR032675 -
Cmo14g00001 1504 Gene3D Transferase(Phosphotransferase) domain 1 1237 1440 - -
Cmo14g00001 1504 Gene3D Transferase(Phosphotransferase) domain 1 268 476 - -
Cmo14g00001 1504 MobiDBLite consensus disorder prediction 36 92 - -
Cmo14g00001 1504 PANTHER LRR RECEPTOR-LIKE KINASE 173 477 - -
Cmo14g00001 1504 Gene3D Phosphorylase Kinase; domain 1 1135 1236 - -
Cmo14g00001 1504 PANTHER LRR RECEPTOR-LIKE KINASE 556 1102 - -
Cmo14g00001 1504 SUPERFAMILY L domain-like 607 959 - -
Cmo14g00001 1504 Gene3D Phosphorylase Kinase; domain 1 152 267 - -
Cmo14g00001 1504 PANTHER LRR RECEPTOR-LIKE KINASE 1103 1444 - -
Cmo14g00001 1504 ProSiteProfiles Protein kinase domain profile. 1161 1440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00001 1504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1281 1293 IPR008271 GO:0004672|GO:0006468
Cmo14g00001 1504 Gene3D Ribonuclease Inhibitor 840 978 IPR032675 -
Cmo14g00001 1504 SUPERFAMILY Protein kinase-like (PK-like) 160 463 IPR011009 -
Cmo14g00001 1504 Pfam Protein kinase domain 188 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00001 1504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Cmo14g00001 1504 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 556 1102 - -
Cmo14g00001 1504 ProSitePatterns Protein kinases ATP-binding region signature. 191 220 IPR017441 GO:0005524
Cmo14g00001 1504 SMART serkin_6 1161 1439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00001 1504 SMART serkin_6 185 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00001 1504 CDD STKc_IRAK 191 465 - -
Cmo14g00001 1504 SUPERFAMILY Protein kinase-like (PK-like) 1146 1455 IPR011009 -
Cmo14g00001 1504 MobiDBLite consensus disorder prediction 132 151 - -
Cmo14g00001 1504 ProSitePatterns Protein kinases ATP-binding region signature. 1167 1189 IPR017441 GO:0005524
Cmo14g00001 1504 ProSiteProfiles Protein kinase domain profile. 185 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g00001 1504 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1103 1444 - -
Cmo14g00001 1504 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 173 477 - -
Cmo14g00001 1504 CDD STKc_IRAK 1167 1433 - -
Cmo14g00001 1504 MobiDBLite consensus disorder prediction 36 84 - -
Cmo14g00001 1504 Pfam Protein tyrosine and serine/threonine kinase 1163 1431 IPR001245 GO:0004672|GO:0006468
Cmo14g00001 1504 Gene3D Ribonuclease Inhibitor 581 738 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00797 Cmo-Chr10:3712738 Cmo14g00001 Cmo-Chr14:550 2.72E-63 dispersed
Cmo10g00837 Cmo-Chr10:3941622 Cmo14g00001 Cmo-Chr14:550 3.88E-55 dispersed
Cmo11g00746 Cmo-Chr11:3638468 Cmo14g00001 Cmo-Chr14:550 7.54E-66 dispersed
Cmo14g00001 Cmo-Chr14:550 Cmo14g01155 Cmo-Chr14:9107560 5.17E-56 dispersed
Cmo05g00774 Cmo-Chr5:4393670 Cmo14g00001 Cmo-Chr14:550 7.48E-59 transposed
Cmo06g00170 Cmo-Chr6:921199 Cmo14g00001 Cmo-Chr14:550 1.45E-58 transposed
Cmo01g00768 Cmo-Chr1:3972850 Cmo14g00001 Cmo-Chr14:550 2.96E-59 wgd
Cmo14g00001 Cmo-Chr14:550 Cmo03g00291 Cmo-Chr3:4131651 9.00E-54 wgd
Cmo14g00001 Cmo-Chr14:550 Cmo06g00168 Cmo-Chr6:914044 5.88E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74809 PF00069 Pkinase 9.80E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00001 - - csv:101220026 1537.7