Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00029 ATGAATAACATAAACCAATCGGTAAATACAGTGGCGGGCGGATCTTGTGAGAAGAGAACCAATGGTTTGGGTATGGAAGCTCCGAAATTCAAGTCTCTTCAGCCGCCTCCATTCCCCATGTCTCCTTCTTCTTACCTATCCGCCTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTCAATTCCCCTCTCTTCTCCTTTGGTCTTTTTCCTTCTCCTACTACTGGTTCCTTCAACTTGAGAAACGATTACGATGATGCCGACCACCAAGAAATGAAGGCAGATCTCAAAAATTACTCCAATTCTTCGTTTAACCCTCAAACAAGATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACTCTACTGAATCCAGGCGGTTTGTCGTGTGATGAAAGTGGAGCGAAATCTGAAGTCGTTGCCACAGATATGGCGGCAGCTCAATCAAACCCAGTTTCTCAGCTGCCTGTTTACAACAGAGAACAGAAAAAATCGGAGAACGATGGATATAACTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGTTATTACAAGTGCACTTTTCCCAATTGCCCAACAAAGAAGAAAGTTGAAAGATCTTTAGATGGCCAAATCACTGAGATTGTTTACAAGGGAAGCCATAATCACGCCAAGCCCCAGCCCACAAGACGTTCCGGTAACTCCGCCGTTTACGACCCCTCGGCGGCGGAATCCACCTTGCTGCTGGAGGATTCCTCCGTCTCAGTGGGGGACGATGAAGTCGAACCCAATTCGCCGTTCAGCAACTCGGTGGACGACAATGAAAATGAACCGGAATCTAAAAGATGGAAAGGGGAAAATGAAAATGAGGGATTTTCTGGGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTGGTTCAAACAACGAGCGAAATTGACATACTGCCTGATGGCTATAGATGGAGGAAATATGGACAAAAAGTGGTCAAAGGAAATCCAAATCCGAGGAGCTACTACAAGTGCACATCTTTAGGGTGCCCTGTAAGGAAACACATAGAGCGGGCGGCCAACGACACGAGGGCCGTGATCACTACCTACGAAGGCAAACACAACCACGAAGTCCCTGCAGCACGCGGCGGCGGTGGAAGCTTCTATAACGCGGTCAATCGACCTGTACCTGCCAACATTCCAATGCCAGTGAGGCCATCCGCTGCCGTCAGCCATTCTTTCCCGACAAATTTTCCGGCCACCTTCCTGGCTGGAAATATAAACATGTCAGAAATAGGAGCACGAGCAGCATCATCATCATTCCCATTTCAGACATCACAAGGAGTGCCCCCAAGTTTTCAAGTTTCAGGATTTGGAACAGCCGCCAAGGAAGAGGCCGAAGACAACATGTTCTTCAACTCATTTCTATCTTAG 1428 47.2 MNNINQSVNTVAGGSCEKRTNGLGMEAPKFKSLQPPPFPMSPSSYLSAFSSGLSPTELLNSPLFSFGLFPSPTTGSFNLRNDYDDADHQEMKADLKNYSNSSFNPQTRSSVSSYFQSSSSNVTLLNPGGLSCDESGAKSEVVATDMAAAQSNPVSQLPVYNREQKKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHAKPQPTRRSGNSAVYDPSAAESTLLLEDSSVSVGDDEVEPNSPFSNSVDDNENEPESKRWKGENENEGFSGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDTRAVITTYEGKHNHEVPAARGGGGSFYNAVNRPVPANIPMPVRPSAAVSHSFPTNFPATFLAGNINMSEIGARAASSSFPFQTSQGVPPSFQVSGFGTAAKEEAEDNMFFNSFLS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 153073 155556 - CmoCh14G000290.1 Cmo14g00029 395295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00029 475 MobiDBLite consensus disorder prediction 1 35 - -
Cmo14g00029 475 SUPERFAMILY WRKY DNA-binding domain 165 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo14g00029 475 ProSiteProfiles WRKY domain profile. 163 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g00029 475 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 20 453 IPR044810 GO:0003700
Cmo14g00029 475 Gene3D WRKY domain 154 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo14g00029 475 Gene3D WRKY domain 302 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo14g00029 475 MobiDBLite consensus disorder prediction 1 16 - -
Cmo14g00029 475 MobiDBLite consensus disorder prediction 275 289 - -
Cmo14g00029 475 MobiDBLite consensus disorder prediction 217 240 - -
Cmo14g00029 475 SUPERFAMILY WRKY DNA-binding domain 309 377 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo14g00029 475 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 20 453 - -
Cmo14g00029 475 Pfam WRKY DNA -binding domain 169 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g00029 475 Pfam WRKY DNA -binding domain 319 375 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g00029 475 MobiDBLite consensus disorder prediction 254 299 - -
Cmo14g00029 475 MobiDBLite consensus disorder prediction 254 274 - -
Cmo14g00029 475 ProSiteProfiles WRKY domain profile. 312 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g00029 475 SMART WRKY_cls 317 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g00029 475 SMART WRKY_cls 168 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g00029 475 MobiDBLite consensus disorder prediction 161 189 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00711 Cmo-Chr2:4449430 Cmo14g00029 Cmo-Chr14:153073 3.42E-94 dispersed
Cmo10g00500 Cmo-Chr10:2229196 Cmo14g00029 Cmo-Chr14:153073 7.51E-17 dispersed
Cmo11g00459 Cmo-Chr11:2239194 Cmo14g00029 Cmo-Chr14:153073 1.00E-16 dispersed
Cmo13g00017 Cmo-Chr13:167081 Cmo14g00029 Cmo-Chr14:153073 3.70E-118 dispersed
Cmo14g00029 Cmo-Chr14:153073 Cmo15g00258 Cmo-Chr15:1248796 3.42E-82 dispersed
Cmo01g00737 Cmo-Chr1:3806759 Cmo14g00029 Cmo-Chr14:153073 2.32E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10896 PF03106 WRKY 7.80E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00029 K13424 - csv:101205651 736.487