Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00054 ATGGAAGGACATCATCCCCATCACCTTATTCCGCTCCACCACCAGCAACAGTTTCAACTCCGTCCGCCGTCGCATCTCCACCCGAGCCTCACCGTCTCCGCCGATCCAACCCTAGCCGCCGCCGCCGCCGCCGCCACCGACAGATTCCCTCAATGGAGCCTTCAGGAAACAAAGGAGTTTTTAACGATCAGAGCCGAGCTGGATCAGACTTTCATGGAAACCAAACGAAACAAGCTCTTGTGGGGAATTACATCCTCCAAAATGAAGGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCATTATAAGGGTTGTGAAACAATGGAGCCAGAAAATTTAAGGCAACAATTTCCATTCTACACAGAACTAAAAGCAATTTTCGGAGCAAGAATGCAAAGGATGTTCATGGCGGAGGCGGAGAGCGGTGGGAGTGGATCGAAGAAGAAGATGAAGACATTATCGTCCGACGACGAGGAAGAAAACGAAGACAGTAACGGCGACGGGGGCGAGACGAAGGTTAGCAGTAGGAAGAGGAAGAAGGTTAAAGGCACGACGATGGCGACGGACGGCGGAGGGGGAAGCGGTAGCCGTTTGAAAGAAATATTGGAAGATTTCATGAACCAACAAATGCAAATGGAGGTGCAATGGAGGGAGGCATTTGAGGCAAGGGAAAAGGAGAGGGAAATGAGAGAAATGGAGTGGAGAAGGAACATGGAAGCTTTGGAACATGAGAGGATTATGTTGGAAAGAAGTTGGAGGGAAAGAGAAGAACAAAGGAGAATGAGAGAGGAAATTAGGGGTGAGAAAAGAGATGCCTTAATCACAGCTTTGTTAAACAAGATTAGAAGAGATGATCATATGTAG 891 47.81 MEGHHPHHLIPLHHQQQFQLRPPSHLHPSLTVSADPTLAAAAAAATDRFPQWSLQETKEFLTIRAELDQTFMETKRNKLLWGITSSKMKEKGFNRSAEQCKCKWKNLVTHYKGCETMEPENLRQQFPFYTELKAIFGARMQRMFMAEAESGGSGSKKKMKTLSSDDEEENEDSNGDGGETKVSSRKRKKVKGTTMATDGGGGSGSRLKEILEDFMNQQMQMEVQWREAFEAREKEREMREMEWRRNMEALEHERIMLERSWREREEQRRMREEIRGEKRDALITALLNKIRRDDHM 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 270457 273250 - CmoCh14G000540.1 Cmo14g00054 395320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00054 296 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 293 - -
Cmo14g00054 296 ProSiteProfiles Myb-like domain profile. 52 108 IPR001005 -
Cmo14g00054 296 CDD GT1 50 115 - -
Cmo14g00054 296 PANTHER - 1 293 - -
Cmo14g00054 296 Gene3D - 52 113 - -
Cmo14g00054 296 MobiDBLite consensus disorder prediction 147 205 - -
Cmo14g00054 296 Pfam Myb/SANT-like DNA-binding domain 51 135 IPR044822 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00359 Cmo14g00054 CCT
Cmo06g00219 Cmo14g00054 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00623 Cmo-Chr4:3097281 Cmo14g00054 Cmo-Chr14:270457 3.07E-38 dispersed
Cmo14g00054 Cmo-Chr14:270457 Cmo04g01491 Cmo-Chr4:7646202 6.59E-14 dispersed
Cmo14g00054 Cmo-Chr14:270457 Cmo03g00359 Cmo-Chr3:4567499 2.96E-52 wgd
Cmo14g00054 Cmo-Chr14:270457 Cmo06g00219 Cmo-Chr6:1181729 1.28E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10897 PF13837 Myb_DNA-bind_4 7.50E-17 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00054 - - csv:101211490 370.933