Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g00054 | ATGGAAGGACATCATCCCCATCACCTTATTCCGCTCCACCACCAGCAACAGTTTCAACTCCGTCCGCCGTCGCATCTCCACCCGAGCCTCACCGTCTCCGCCGATCCAACCCTAGCCGCCGCCGCCGCCGCCGCCACCGACAGATTCCCTCAATGGAGCCTTCAGGAAACAAAGGAGTTTTTAACGATCAGAGCCGAGCTGGATCAGACTTTCATGGAAACCAAACGAAACAAGCTCTTGTGGGGAATTACATCCTCCAAAATGAAGGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCATTATAAGGGTTGTGAAACAATGGAGCCAGAAAATTTAAGGCAACAATTTCCATTCTACACAGAACTAAAAGCAATTTTCGGAGCAAGAATGCAAAGGATGTTCATGGCGGAGGCGGAGAGCGGTGGGAGTGGATCGAAGAAGAAGATGAAGACATTATCGTCCGACGACGAGGAAGAAAACGAAGACAGTAACGGCGACGGGGGCGAGACGAAGGTTAGCAGTAGGAAGAGGAAGAAGGTTAAAGGCACGACGATGGCGACGGACGGCGGAGGGGGAAGCGGTAGCCGTTTGAAAGAAATATTGGAAGATTTCATGAACCAACAAATGCAAATGGAGGTGCAATGGAGGGAGGCATTTGAGGCAAGGGAAAAGGAGAGGGAAATGAGAGAAATGGAGTGGAGAAGGAACATGGAAGCTTTGGAACATGAGAGGATTATGTTGGAAAGAAGTTGGAGGGAAAGAGAAGAACAAAGGAGAATGAGAGAGGAAATTAGGGGTGAGAAAAGAGATGCCTTAATCACAGCTTTGTTAAACAAGATTAGAAGAGATGATCATATGTAG | 891 | 47.81 | MEGHHPHHLIPLHHQQQFQLRPPSHLHPSLTVSADPTLAAAAAAATDRFPQWSLQETKEFLTIRAELDQTFMETKRNKLLWGITSSKMKEKGFNRSAEQCKCKWKNLVTHYKGCETMEPENLRQQFPFYTELKAIFGARMQRMFMAEAESGGSGSKKKMKTLSSDDEEENEDSNGDGGETKVSSRKRKKVKGTTMATDGGGGSGSRLKEILEDFMNQQMQMEVQWREAFEAREKEREMREMEWRRNMEALEHERIMLERSWREREEQRRMREEIRGEKRDALITALLNKIRRDDHM | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 270457 | 273250 | - | CmoCh14G000540.1 | Cmo14g00054 | 395320 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g00054 | 296 | PANTHER | TRANSCRIPTION FACTOR MYB FAMILY-RELATED | 1 | 293 | - | - | |
Cmo14g00054 | 296 | ProSiteProfiles | Myb-like domain profile. | 52 | 108 | IPR001005 | - | |
Cmo14g00054 | 296 | CDD | GT1 | 50 | 115 | - | - | |
Cmo14g00054 | 296 | PANTHER | - | 1 | 293 | - | - | |
Cmo14g00054 | 296 | Gene3D | - | 52 | 113 | - | - | |
Cmo14g00054 | 296 | MobiDBLite | consensus disorder prediction | 147 | 205 | - | - | |
Cmo14g00054 | 296 | Pfam | Myb/SANT-like DNA-binding domain | 51 | 135 | IPR044822 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00359 | Cmo14g00054 | CCT | |
Cmo06g00219 | Cmo14g00054 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00623 | Cmo-Chr4:3097281 | Cmo14g00054 | Cmo-Chr14:270457 | 3.07E-38 | dispersed | |
Cmo14g00054 | Cmo-Chr14:270457 | Cmo04g01491 | Cmo-Chr4:7646202 | 6.59E-14 | dispersed | |
Cmo14g00054 | Cmo-Chr14:270457 | Cmo03g00359 | Cmo-Chr3:4567499 | 2.96E-52 | wgd | |
Cmo14g00054 | Cmo-Chr14:270457 | Cmo06g00219 | Cmo-Chr6:1181729 | 1.28E-116 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10897 | PF13837 | Myb_DNA-bind_4 | 7.50E-17 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g00054 | - | - | csv:101211490 | 370.933 |