Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00058 ATGGAAATGGCCTCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGACTATAGCGGTCGCCGCGCCGCTCTTGTTCGAGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGCCTTTATGGACATCCCAATGAGACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATTAATTTTGCTAGGGATGGCATGAACAGAAAAGATTGGTTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTTTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTGTTTAGCTTGATGAACGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCGAAGAGATCCAATGATGGGCAAGTGAAAAGCAATCCGAAACTTGCCGAACAGAGTTACGAGGAGGATGTCGATGAACATAGCGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGACGAGTTCTGGATTGGCTGCGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAAGATAACACCTGCCAAGGCTGACAGTATCAAACAATATAAATGTCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG 723 47.03 MEMASTTPKTVEEIFKDYSGRRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRSQGSAKRSNDGQVKSNPKLAEQSYEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCSMKKGRQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 290148 293091 - CmoCh14G000580.1 Cmo14g00058 395324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00058 240 CDD PHD_AL_plant 186 236 IPR044104 -
Cmo14g00058 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 234 IPR013083 -
Cmo14g00058 240 PANTHER CPG BINDING PROTEIN 4 239 IPR045104 GO:0006355|GO:0042393
Cmo14g00058 240 MobiDBLite consensus disorder prediction 141 175 - -
Cmo14g00058 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Cmo14g00058 240 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 4 239 - -
Cmo14g00058 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Cmo14g00058 240 Pfam PHD-finger 187 235 IPR019787 -
Cmo14g00058 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Cmo14g00058 240 MobiDBLite consensus disorder prediction 146 170 - -
Cmo14g00058 240 SMART PHD_3 186 234 IPR001965 -
Cmo14g00058 240 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00221 Cmo14g00058 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00150 Cmo-Chr4:788242 Cmo14g00058 Cmo-Chr14:290148 1.98E-129 dispersed
Cmo14g00058 Cmo-Chr14:290148 Cmo17g00678 Cmo-Chr17:6938430 1.06E-99 dispersed
Cmo14g00058 Cmo-Chr14:290148 Cmo04g01181 Cmo-Chr4:6039376 4.75E-141 wgd
Cmo14g00058 Cmo-Chr14:290148 Cmo06g00221 Cmo-Chr6:1192609 1.06E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10898 PF12165 Alfin 5.40E-67 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00058 - - csv:101211970 470.314