Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo14g00095 | ATGGCGCCTCCGGAAGTTTCCCAATCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTTAGTGGTAGTGATTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACCCCGATGAGGGTTCGTGTCCCTCTCAGTTTTTGTCGACCAACGGTGGTTCTTATGATGAGTTTAGGTTTTCTTTTGTTTCTCAGCCGGAGGTTGGGGTTGCTTCGGATTCTCGCCGAGTTTCGTCGGTTTCGGTTCATTCGGTGGAGGTTGAAAATGAAAATGGGATTTCTGAAATCAAGGTGCATTTGGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATCGAATTGGGTTGTTCGTGCAAGGATGATTTGGCTGTTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAACAAGACATGTGAGATTTGCCATTCCATTGCACAAAACATTGTCGAACCAAATGAGGTTGAGTTAACAGAGCAATCTAATGAATCCAACAACGCCTCCTCAACAACTGCGGTTGCTGCATCAACTCCCCCATCAGACTCCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTCTGCTTGCTTGTATGTTATTGAGCGTTGATTGTGGCGATGTACAGGAGAAACACATGAACAAGCTCTGTGCTTTCTCAAGGTCCCATCTTTACAGTGAAATGAAGAGGTGA | 741 | 45.88 | MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDPDEGSCPSQFLSTNGGSYDEFRFSFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSIAQNIVEPNEVELTEQSNESNNASSTTAVAASTPPSDSQSFWRGHRFLNFLLACMLLSVDCGDVQEKHMNKLCAFSRSHLYSEMKR | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 448197 | 451061 | + | CmoCh14G000950.1 | Cmo14g00095 | 395361 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo14g00095 | 246 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270 | |
| Cmo14g00095 | 246 | SUPERFAMILY | RING/U-box | 104 | 161 | - | - | |
| Cmo14g00095 | 246 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cmo14g00095 | 246 | PANTHER | OS01G0850200 PROTEIN | 8 | 218 | - | - | |
| Cmo14g00095 | 246 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 167 | IPR013083 | - | |
| Cmo14g00095 | 246 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270 | |
| Cmo14g00095 | 246 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| Cmo14g00095 | 246 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270 | |
| Cmo14g00095 | 246 | PANTHER | ZINC FINGER, RING-CH-TYPE | 8 | 218 | - | - | |
| Cmo14g00095 | 246 | MobiDBLite | consensus disorder prediction | 173 | 199 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo07g01079 | Cmo14g00095 | CCT | |
| Cmo07g01079 | Cmo14g00095 | ECH | |
| Cmo06g00261 | Cmo14g00095 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo14g00095 | Cmo-Chr14:448197 | Cmo01g01384 | Cmo-Chr1:10893944 | 1.49E-13 | dispersed | |
| Cmo03g00035 | Cmo-Chr3:667550 | Cmo14g00095 | Cmo-Chr14:448197 | 7.11E-09 | transposed | |
| Cmo14g00095 | Cmo-Chr14:448197 | Cmo15g00126 | Cmo-Chr15:602427 | 6.03E-62 | wgd | |
| Cmo14g00095 | Cmo-Chr14:448197 | Cmo04g03049 | Cmo-Chr4:21346815 | 1.01E-60 | wgd | |
| Cmo14g00095 | Cmo-Chr14:448197 | Cmo06g00261 | Cmo-Chr6:1331216 | 1.19E-138 | wgd | |
| Cmo14g00095 | Cmo-Chr14:448197 | Cmo07g01079 | Cmo-Chr7:5607475 | 3.98E-50 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo14g00095 | - | - | csv:101218915 | 350.903 |