Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00095 ATGGCGCCTCCGGAAGTTTCCCAATCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTTAGTGGTAGTGATTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACCCCGATGAGGGTTCGTGTCCCTCTCAGTTTTTGTCGACCAACGGTGGTTCTTATGATGAGTTTAGGTTTTCTTTTGTTTCTCAGCCGGAGGTTGGGGTTGCTTCGGATTCTCGCCGAGTTTCGTCGGTTTCGGTTCATTCGGTGGAGGTTGAAAATGAAAATGGGATTTCTGAAATCAAGGTGCATTTGGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATCGAATTGGGTTGTTCGTGCAAGGATGATTTGGCTGTTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAACAAGACATGTGAGATTTGCCATTCCATTGCACAAAACATTGTCGAACCAAATGAGGTTGAGTTAACAGAGCAATCTAATGAATCCAACAACGCCTCCTCAACAACTGCGGTTGCTGCATCAACTCCCCCATCAGACTCCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTCTGCTTGCTTGTATGTTATTGAGCGTTGATTGTGGCGATGTACAGGAGAAACACATGAACAAGCTCTGTGCTTTCTCAAGGTCCCATCTTTACAGTGAAATGAAGAGGTGA 741 45.88 MAPPEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDPDEGSCPSQFLSTNGGSYDEFRFSFVSQPEVGVASDSRRVSSVSVHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSIAQNIVEPNEVELTEQSNESNNASSTTAVAASTPPSDSQSFWRGHRFLNFLLACMLLSVDCGDVQEKHMNKLCAFSRSHLYSEMKR 246
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 448197 451061 + CmoCh14G000950.1 Cmo14g00095 395361
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00095 246 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270
Cmo14g00095 246 SUPERFAMILY RING/U-box 104 161 - -
Cmo14g00095 246 MobiDBLite consensus disorder prediction 1 25 - -
Cmo14g00095 246 PANTHER OS01G0850200 PROTEIN 8 218 - -
Cmo14g00095 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 167 IPR013083 -
Cmo14g00095 246 SMART ringv_2 106 159 IPR011016 GO:0008270
Cmo14g00095 246 CDD RING_CH-C4HC3_MARCH 107 159 - -
Cmo14g00095 246 Pfam RING-variant domain 107 158 IPR011016 GO:0008270
Cmo14g00095 246 PANTHER ZINC FINGER, RING-CH-TYPE 8 218 - -
Cmo14g00095 246 MobiDBLite consensus disorder prediction 173 199 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo07g01079 Cmo14g00095 CCT
Cmo07g01079 Cmo14g00095 ECH
Cmo06g00261 Cmo14g00095 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00095 Cmo-Chr14:448197 Cmo01g01384 Cmo-Chr1:10893944 1.49E-13 dispersed
Cmo03g00035 Cmo-Chr3:667550 Cmo14g00095 Cmo-Chr14:448197 7.11E-09 transposed
Cmo14g00095 Cmo-Chr14:448197 Cmo15g00126 Cmo-Chr15:602427 6.03E-62 wgd
Cmo14g00095 Cmo-Chr14:448197 Cmo04g03049 Cmo-Chr4:21346815 1.01E-60 wgd
Cmo14g00095 Cmo-Chr14:448197 Cmo06g00261 Cmo-Chr6:1331216 1.19E-138 wgd
Cmo14g00095 Cmo-Chr14:448197 Cmo07g01079 Cmo-Chr7:5607475 3.98E-50 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00095 - - csv:101218915 350.903