Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g00104 ATGGCTGAAGGTATTGAATCCTTCGACCATGTCCCTCAACAAAGCCGGCGCGACAAGCTCCGGGAACATTCCGACCACCGTTCCACTTTCCTCCCTTTCTACGACGACCCTTCATCCTTAATCTCCCCCCCATCCGACTCCACCCATCGTTTCCAATTCCAGCACCACCCTTTCTTCGACCCCCAAATCCAATCCTCCCTCTTACCCGACATCCATCATCAAAACCATTGCTTCACCTCCGAGCCTCTCTCCCTCTCCCTCTCCTCTCAGCCCTTCCTCGCCGCCCCTATTCCCGCCGCCCTCCCTCTCGGCCCTTTCACCGGCTACGCTTCCATTTTAAAAGGCTCCAGGTTTTTAAAGCCTGCCCACCAGTTGCTAGAGGAGCTTTGCGATGTGGTTGGCCTTCATCCCGCCTTCCCCTCCTCTTCCTCCCTCAACTCTCCCCCTTCTCCTTCTCCCTCTGCTTTCATGGATGACCCTTCCTCTGACTCTCCAATTCTCGACCACCATCCCCTTGCTTCCTCTCATTCTGCCCCTCCTATCAAATCCACCCTTCTCTCAATGCTCGATGAGGGACATTTGGGTTTAATGCGTAATTACCATGCTTCCTTATTGCATATCACAATAATACGTGAAACTGAAGGAAGGAAGGGAGGAACATGCAACCTTATTATTATTCCTAAGATTGATTGTTGTATTCGTGTATTTAAAAGATTGTTTTATCCTCTCATCTTTTTAGAAAAGGTGACGAGAGGGAATATATGCACAAATCAGTATTGGCCTTCCAAAGTGCCTCTCGCTAACTTGATAGCTCTAAGGATACTTTTACCAAGTTTGGGCATAATGTGCTTAATCAAAGTCCTCCAACGAATCCATTTCCATAAAGATTTATACCAATTAAACCCATTTTCACCACAAATATATTCTCTGAAATATAAGCAGTACTATCAACAAGTTCAGGAAGTAATGACATCTTTTGAGTACATCTCTGGCCTTGGGAATGCAGCGCCCTATGCAAACCAGGCTATTAAAGTGATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTTGACCAACTTCAATTCAATAAGAAGACTCGTGGTGACTACGGTCAAAGATCCGGTCAGAACCCGGGATTTCTCGACCATCAGCCTGTTTGGCGACCGCAACGGGGGCTTCCCGAACGAGCAGTCACCGTTCTTCGTGCTTGGTTGTTCGAACATTTTTTGCATCCTTATCCTTCTGATACAGACAAGCTTATGTTGGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATTAATGCAAGAGTTAGGCTTTGGAAGCCAATGGTTGAAGAAATATACATGCTTGAAACCAAACAAACACAGAAGAATTTGCATAGAGATGATCGCGACTCCAACAGGCTAAACGATCACCATCCAACCAACTTGCTCGCCATCGATAACCCCTCTAAATCCGCTCAAGAAATTCAAGATACTCCTACCAAACGTACCCGAAACAAACCTCACGAAGTGCCAATGGGAAATCACGACGAGCCCTTGAACGTGTCTTACAACGTTTCGAGCCATCCCCATGTAGGCTCAAATGCAAATATGGGGGGGAACAACAATGGAGTTTCGCTAACTCTTGGTCTTCACCAGAACAACAATAACGGCATTGGTGGTGGCTTTTCAGAACCCTTTCCTGTTGGGTTCCCCGTTGCGGCGACTCGACGTTTCGGGCTGGGAATTCAAGGCAGTAGTGATGGGTATGTAATGGGAGGACATTTTGGTAGAGATGTTGTTGGAGGGCAGCTGTTACATGACTTTGTAGGGTGA 1836 46.79 MAEGIESFDHVPQQSRRDKLREHSDHRSTFLPFYDDPSSLISPPSDSTHRFQFQHHPFFDPQIQSSLLPDIHHQNHCFTSEPLSLSLSSQPFLAAPIPAALPLGPFTGYASILKGSRFLKPAHQLLEELCDVVGLHPAFPSSSSLNSPPSPSPSAFMDDPSSDSPILDHHPLASSHSAPPIKSTLLSMLDEGHLGLMRNYHASLLHITIIRETEGRKGGTCNLIIIPKIDCCIRVFKRLFYPLIFLEKVTRGNICTNQYWPSKVPLANLIALRILLPSLGIMCLIKVLQRIHFHKDLYQLNPFSPQIYSLKYKQYYQQVQEVMTSFEYISGLGNAAPYANQAIKVMYKHFKCLKNAILDQLQFNKKTRGDYGQRSGQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQTQKNLHRDDRDSNRLNDHHPTNLLAIDNPSKSAQEIQDTPTKRTRNKPHEVPMGNHDEPLNVSYNVSSHPHVGSNANMGGNNNGVSLTLGLHQNNNNGIGGGFSEPFPVGFPVAATRRFGLGIQGSSDGYVMGGHFGRDVVGGQLLHDFVG 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 480107 483190 + CmoCh14G001040.1 Cmo14g00104 395370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g00104 611 MobiDBLite consensus disorder prediction 483 497 - -
Cmo14g00104 611 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 311 558 - -
Cmo14g00104 611 MobiDBLite consensus disorder prediction 498 514 - -
Cmo14g00104 611 Pfam Homeobox KN domain 405 444 IPR008422 GO:0003677|GO:0006355
Cmo14g00104 611 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 66 191 - -
Cmo14g00104 611 MobiDBLite consensus disorder prediction 1 23 - -
Cmo14g00104 611 Pfam Associated with HOX 311 357 IPR006563 -
Cmo14g00104 611 SMART HOX_1 388 452 IPR001356 GO:0003677
Cmo14g00104 611 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 66 191 - -
Cmo14g00104 611 MobiDBLite consensus disorder prediction 462 477 - -
Cmo14g00104 611 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 311 558 - -
Cmo14g00104 611 ProSiteProfiles 'Homeobox' domain profile. 385 448 IPR001356 GO:0003677
Cmo14g00104 611 Gene3D - 391 453 - -
Cmo14g00104 611 MobiDBLite consensus disorder prediction 462 519 - -
Cmo14g00104 611 SUPERFAMILY Homeodomain-like 390 455 IPR009057 -
Cmo14g00104 611 CDD homeodomain 388 449 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00411 Cmo14g00104 CCT
Cmo07g01064 Cmo14g00104 CCT
Cmo03g00411 Cmo14g00104 ECH
Cmo07g01064 Cmo14g00104 ECH
Cmo06g00271 Cmo14g00104 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00104 Cmo-Chr14:480107 Cmo13g00245 Cmo-Chr13:2012539 1.17E-08 dispersed
Cmo14g00104 Cmo-Chr14:480107 Cmo03g00411 Cmo-Chr3:4872357 3.92E-08 wgd
Cmo14g00104 Cmo-Chr14:480107 Cmo06g00271 Cmo-Chr6:1371446 4.20E-46 wgd
Cmo14g00104 Cmo-Chr14:480107 Cmo07g01064 Cmo-Chr7:5426177 3.38E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10899 PF07526 POX 6.20E-05 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g00104 - - cmax:111481510 592.808